View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10691_low_28 (Length: 214)
Name: NF10691_low_28
Description: NF10691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10691_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 29 - 204
Target Start/End: Original strand, 40689981 - 40690156
Alignment:
| Q |
29 |
caccgcgcgccggtgggaacatctgcagccaacactacactctctttgacaccaatggctttggaacctgatgaagatcatcctagaaagaaaaggaatg |
128 |
Q |
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| T |
40689981 |
caccgtgcaccggtgggaacttctgcagccaacaccacactctctttgacaacaatggctttggaacctgatgaagatcatcctagaaagaaaaggaatg |
40690080 |
T |
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| Q |
129 |
ttttgtctttggatttggatctcaaccttcctgcacctgaagatgatcatagagaatctaagtttgcctttgcttc |
204 |
Q |
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| T |
40690081 |
ttttgtctttggatttggatctcaaccttcctgcacctgaagatgatcatagagaatctaagtttgcctttgcttc |
40690156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 34714363 - 34714448
Alignment:
| Q |
110 |
cctagaaagaaaaggaatgttttgtctttggatttggatctcaaccttcctgcacctgaagatgatcatagagaatctaagtttgcctt |
198 |
Q |
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| T |
34714363 |
cctagaaagaaaatgaatgtct---ctttggatttggatctcaaccttcctgcagcttaagaagatcaaagagagttcaagtttgcctt |
34714448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 34710689 - 34710740
Alignment:
| Q |
135 |
ctttggatttggatctcaaccttcctgcacctgaagatgatcatagagaatc |
186 |
Q |
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| T |
34710689 |
ctttggatttggatctcaaccttcctgcagcttaagaagatcaaagagaatc |
34710740 |
T |
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