View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10691_low_3 (Length: 417)

Name: NF10691_low_3
Description: NF10691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10691_low_3
NF10691_low_3
[»] chr5 (3 HSPs)
chr5 (159-403)||(14085769-14086017)
chr5 (15-141)||(14085658-14085784)
chr5 (131-205)||(14085682-14085756)
[»] chr6 (2 HSPs)
chr6 (98-174)||(12189602-12189678)
chr6 (39-84)||(12189600-12189645)
[»] chr1 (4 HSPs)
chr1 (39-171)||(15978457-15978588)
chr1 (39-189)||(22898595-22898744)
chr1 (125-189)||(15978451-15978514)
chr1 (39-155)||(22898504-22898619)
[»] chr8 (2 HSPs)
chr8 (45-189)||(16307665-16307808)
chr8 (39-155)||(16307477-16307592)
[»] chr7 (1 HSPs)
chr7 (47-94)||(19975052-19975099)


Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 159 - 403
Target Start/End: Original strand, 14085769 - 14086017
Alignment:
Q  159 catgcataaactcaaccaacataagcatcaataagtcagaagctatagaatttaataaaatgaaaatcactaaactgaagctatacattaataatctttg 258  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14085769 catgcataaacacaaccaacataagcatcaataagtcagaagctatagaatttaataaaatgaaaatcactaaactgaagctatacattaataatctttg 14085868  T
Q  259 tcatacatatacaaag--aagaa--gaaaaaacaagtaacaaaactgaagctaatattaaatcaactaaaaattacttactttgacaagctggagttctc 354  Q
    ||||||||||||||||  |||||   |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14085869 tcatacatatacaaagaaaagaaagaaaaaaaaaagtaacaaaactgaagctaatattaaatcaactaaaaattacttactttgacaagctggagttctc 14085968  T
Q  355 atagatgcagtacagggagaggttcgattatttgaaatcataaacaaat 403  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14085969 atagatgcagtagagggagaggttcgattatttgaaatcataaacaaat 14086017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 14085658 - 14085784
Alignment:
Q  15 agcataggaatcaacaaaatatggataaactcaacaaagtatgcatcaaagacatggataaactcaacaagcataagcatttacaagtcagaagctatat 114  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14085658 agcataagaatcaacaaaatatggataaactcaacaaagtatgcatcaaagacatggataaactcaacaagcataagcatttacaagtcagaagctatat 14085757  T
Q  115 acattaatattcatgcataaactcaac 141  Q
    |||||||||||||||||||||| ||||    
T  14085758 acattaatattcatgcataaacacaac 14085784  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 14085682 - 14085756
Alignment:
Q  131 ataaactcaacaaaatatgcataaaaaacatgcataaactcaaccaacataagcatcaataagtcagaagctata 205  Q
    |||||||||||||| ||||||| ||| ||||| ||||||||||| | |||||||||  | |||||||||||||||    
T  14085682 ataaactcaacaaagtatgcatcaaagacatggataaactcaacaagcataagcatttacaagtcagaagctata 14085756  T

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Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 12189678 - 12189602
Alignment:
Q  98 caagtcagaagctatatacattaatattcatgcataaactcaacaaaatatgcataaaaaacatgcataaactcaac 174  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| ||| ||||  |||||||||||    
T  12189678 caagtcagaagctatagacattaataatcatgcataaactcaacaaaatatacatcaaagacatagataaactcaac 12189602  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 12189645 - 12189600
Alignment:
Q  39 ataaactcaacaaagtatgcatcaaagacatggataaactcaacaa 84  Q
    |||||||||||||| ||| |||||||||||| ||||||||||||||    
T  12189645 ataaactcaacaaaatatacatcaaagacatagataaactcaacaa 12189600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 171
Target Start/End: Original strand, 15978457 - 15978588
Alignment:
Q  39 ataaactcaacaaagtatgcatcaaagacatggataaactcaacaagcataagcatttacaagtcagaagctatatacattaatattcatgcataaactc 138  Q
    |||||||||||||| | |||  |||| |||| |||||||||||||| ||| |||||  |||| |||  ||||||||||||||| | |  |||| ||||||    
T  15978457 ataaactcaacaaaatgtgcc-caaaaacatagataaactcaacaaacatgagcatcaacaactcatcagctatatacattaaaaattgtgcaaaaactc 15978555  T
Q  139 aacaaaatatgcataaaaaacatgcataaactc 171  Q
    || |||||||| || ||| ||||| ||||||||    
T  15978556 aataaaatatgtatcaaagacatggataaactc 15978588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 189
Target Start/End: Original strand, 22898595 - 22898744
Alignment:
Q  39 ataaactcaacaaagtatgcatcaaagacatggataaactcaacaagcataagcatttacaagtcagaagctatatacattaatattcatgcataaactc 138  Q
    ||||| |||||||||| ||||| ||||||||||||||| ||| ||| ||| |||||  || | |||| ||| |||  |||||| | ||||||||||| |     
T  22898595 ataaattcaacaaagtgtgcat-aaagacatggataaaatcagcaaacatgagcataaacgactcagcagccataggcattaaaaatcatgcataaattt 22898693  T
Q  139 aacaaaatatgcataaaaaacatgcataaactcaaccaacataagcatcaa 189  Q
    |||||| | ||||| |||  |||| ||||||||||| | ||| ||||||||    
T  22898694 aacaaagtgtgcatcaaagccatgaataaactcaacaagcatgagcatcaa 22898744  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 15978451 - 15978514
Alignment:
Q  125 tcatgcataaactcaacaaaatatgcataaaaaacatgcataaactcaaccaacataagcatcaa 189  Q
    |||||||||||||||||||||| |||   ||||||||  ||||||||||| ||||| ||||||||    
T  15978451 tcatgcataaactcaacaaaatgtgc-ccaaaaacatagataaactcaacaaacatgagcatcaa 15978514  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 22898504 - 22898619
Alignment:
Q  39 ataaactcaacaaagtatgcatcaaagacatggataaactcaacaagcataagcatttacaagtcagaagctatatacattaatattcatgcataaactc 138  Q
    ||||| |||||||||| ||||| ||||||||||| ||| ||| ||| ||| |||||  | || |||| ||| |||  |||||| | ||||||||||| ||    
T  22898504 ataaattcaacaaagtgtgcat-aaagacatggaaaaaatcagcaaacatgagcataaaaaactcagcagccatagccattaaaagtcatgcataaattc 22898602  T
Q  139 aacaaaatatgcataaa 155  Q
    |||||| | ||||||||    
T  22898603 aacaaagtgtgcataaa 22898619  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 189
Target Start/End: Original strand, 16307665 - 16307808
Alignment:
Q  45 tcaacaaagtatgcatcaaagacatggataaactcaacaagcataagcatttacaagtcagaagctatatacattaatattcatgcataaactcaacaaa 144  Q
    |||||||||| ||||| |||||||| |||||| ||| ||| ||| |||||  |||| |||| ||| |||  |||||| | ||||||||||| | ||||||    
T  16307665 tcaacaaagtgtgcat-aaagacatagataaaatcagcaaacatgagcataaacaactcagcagccataggcattaaaaatcatgcataaatttaacaaa 16307763  T
Q  145 atatgcataaaaaacatgcataaactcaaccaacataagcatcaa 189  Q
     | ||||| |||  |||| ||||||||||| | ||| ||||||||    
T  16307764 gtgtgcatcaaagccatgaataaactcaacaagcattagcatcaa 16307808  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 16307477 - 16307592
Alignment:
Q  39 ataaactcaacaaagtatgcatcaaagacatggataaactcaacaagcataagcatttacaagtcagaagctatatacattaatattcatgcataaactc 138  Q
    ||||| |||||||||| ||||| ||||||||||| ||| ||| |||  || |||||  | || |||| |||||||  |||||| | ||||||||||| ||    
T  16307477 ataaattcaacaaagtgtgcat-aaagacatggaaaaaatcagcaaatatgagcatacaaaactcagcagctatagccattaaaagtcatgcataaattc 16307575  T
Q  139 aacaaaatatgcataaa 155  Q
    |||||| | ||||||||    
T  16307576 aacaaagtgtgcataaa 16307592  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 19975052 - 19975099
Alignment:
Q  47 aacaaagtatgcatcaaagacatggataaactcaacaagcataagcat 94  Q
    |||||||| |||||||||| |||| ||||||||||||||||| |||||    
T  19975052 aacaaagtgtgcatcaaagccatgaataaactcaacaagcatgagcat 19975099  T

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