View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10691_low_9 (Length: 282)
Name: NF10691_low_9
Description: NF10691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10691_low_9 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 13767 - 14012
Alignment:
| Q |
20 |
tgtgaggatgaagatggttcatctgttatggcatgtgtgaatgtagttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtgaaatt |
119 |
Q |
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| T |
13767 |
tgtgaagatgaaggtggttcatctgttatggcatgtgtgaatgaagttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtgaaatt |
13866 |
T |
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| Q |
120 |
agagttaacctggaacgttatctgttgtatgtgaagtggctttggcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttccccag |
219 |
Q |
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| T |
13867 |
agagttaacctggaacgttatctgttgtatgtgaagtggctttgtcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttccccag |
13966 |
T |
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| Q |
220 |
atacaacctcgtgacccttttaatcatgtctagtccttgggtactg |
265 |
Q |
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| T |
13967 |
atacaacttcgtgacccttttaatcatgtctagtccttgggtactg |
14012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 265
Target Start/End: Complemental strand, 42933004 - 42932759
Alignment:
| Q |
20 |
tgtgaggatgaagatggttcatctgttatggcatgtgtgaatgtagttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtgaaatt |
119 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42933004 |
tgtgaagatgaaggtggttcatctgttatggcatgtgtgaatgaagttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtgaaatt |
42932905 |
T |
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| Q |
120 |
agagttaacctggaacgttatctgttgtatgtgaagtggctttggcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttccccag |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42932904 |
agagttaacctggaacgttatctgttgtatgtgaagtggctttgtcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttccccag |
42932805 |
T |
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| Q |
220 |
atacaacctcgtgacccttttaatcatgtctagtccttgggtactg |
265 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42932804 |
atacaacttcgtgacccttttaatcatgtctagtccttgggtactg |
42932759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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