View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10692_high_1 (Length: 456)
Name: NF10692_high_1
Description: NF10692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10692_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 70 - 446
Target Start/End: Original strand, 51149470 - 51149846
Alignment:
| Q |
70 |
tgaatgaaaaacttccaacattggactgacaaaatctaatagcaatattatactgggaccagaaaggatcttattaaagggacaaatccgtcattttcgt |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51149470 |
tgaatgaaaaacttccaacattggactgacaaaatctaatagcaatgttataccgggaccagaaaggatcttattaaagggacaaatccgtcattttcgt |
51149569 |
T |
|
| Q |
170 |
aaacgctgacacactggcaattttttgctctgttaacttaaaacccacaccacacacacttaaatccgaatttagtttattcgttcattcatggcataaa |
269 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51149570 |
aaacgctgacacattggcaattttttgctctgttaacttaaaccccacaccacacacacttaaatccgaatttagtttattcgttcattcatggcataaa |
51149669 |
T |
|
| Q |
270 |
cacacgattattctgtcattacatgacaaacactagagtttattagtggtnnnnnnnnttactagaaaataaataaggacatcgtttactgacacaatac |
369 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51149670 |
cacacgattattctgccattacatgacaaacactagagtttattagtggtaaaaaaaattactagaaaataaataaggacatcgtttactgacacaatac |
51149769 |
T |
|
| Q |
370 |
catcatcctattcctatctatcctctggtggggtggaacggtttttactgactctactataacctctgttgcctttg |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51149770 |
catcatcctattcctatctatcctctggtggggtggaacggtttttactgactctactataacctctgttgcctttg |
51149846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University