View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10692_low_2 (Length: 423)
Name: NF10692_low_2
Description: NF10692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10692_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 4236006 - 4235890
Alignment:
| Q |
14 |
agagcaagaacttagaacaaaatgataaactttgattgcaatgtaaacaagttcacaagatattccaaggtggtttacaagtctgatatgagccctatat |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4236006 |
agagcaagaacttagaacaaaatgataaactttgattgcaatgcaaacaagttcacaagatattccaaggtggtttacaagtctgatatgagccctatat |
4235907 |
T |
|
| Q |
114 |
acagcttataaccttag |
130 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4235906 |
acagcttataaccttag |
4235890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 7839332 - 7839266
Alignment:
| Q |
16 |
agcaagaacttagaacaaaatgataaactttgattgcaatgtaaacaagttcacaagatattccaag |
82 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
7839332 |
agcaagaacttaaaacaaaatgataaactttgattgcaatgtaaagaagttcacaatatattccaag |
7839266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 17735219 - 17735301
Alignment:
| Q |
58 |
aaacaagttcacaagatattccaaggtggtttacaagtctgatatgagccctatatacagcttataaccttagacaaggcattaa |
142 |
Q |
| |
|
|||||||||||| |||| |||||| |||||||||| ||| ||||||||| ||| || ||| || ||||| | |||||||||||| |
|
|
| T |
17735219 |
aaacaagttcaccagat--tccaagatggtttacaactctcatatgagccatatttatagcctagaacctcatacaaggcattaa |
17735301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 36709775 - 36709904
Alignment:
| Q |
19 |
aagaacttagaacaaaatgataaactttgattgcaatgt--aaacaagttcacaagatattccaaggtggtttacaagtctgatatgagccctatataca |
116 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||| |||| | |||||| ||||||||||||||| | | ||||| |||||||||||||||| |||||| | |
|
|
| T |
36709775 |
aagaactttgaacaaaatgctaacttttgatt-caatcttaaaacaacttcacaagatattccccgatagtttataagtctgatatgagccatatatata |
36709873 |
T |
|
| Q |
117 |
gcttataaccttagacaaggcattaaactcg |
147 |
Q |
| |
|
|| |||||| ||||||||||||||||||||| |
|
|
| T |
36709874 |
gcctataactttagacaaggcattaaactcg |
36709904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 86 - 241
Target Start/End: Original strand, 15048421 - 15048578
Alignment:
| Q |
86 |
gtttacaagtctgatatgagccctatatacagcttataaccttagacaaggcattaaactcgcattacaaggcattaaccatcaaaaacta--agttttc |
183 |
Q |
| |
|
|||||||| |||||||||||||| || || ||| || ||||| | ||||||||||||||||| ||||||||||||||| |||| | | ||||||| |
|
|
| T |
15048421 |
gtttacaactctgatatgagccccatttatagcctagaacctcatacaaggcattaaactcggattacaaggcattaataggcaaattccaatagttttc |
15048520 |
T |
|
| Q |
184 |
agcattaacttatggctgcataacgtgcacggtcgtgttggtgagacacacgaccgtg |
241 |
Q |
| |
|
| |||||| || ||||||||||||||||||||| ||||||| ||||| |||||| |
|
|
| T |
15048521 |
aacattaaaaactgactgcataacgtgcacggtcgtcctggtgaggcacacaaccgtg |
15048578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 86 - 241
Target Start/End: Complemental strand, 15106003 - 15105846
Alignment:
| Q |
86 |
gtttacaagtctgatatgagccctatatacagcttataaccttagacaaggcattaaactcgcattacaaggcattaaccatcaaaaacta--agttttc |
183 |
Q |
| |
|
|||||||| |||||||||||||| || || ||| || ||||| | ||||||||||||||||| ||||||||||||||| |||| | | ||||||| |
|
|
| T |
15106003 |
gtttacaactctgatatgagccccatttatagcctagaacctcatacaaggcattaaactcggattacaaggcattaataggcaaattccaatagttttc |
15105904 |
T |
|
| Q |
184 |
agcattaacttatggctgcataacgtgcacggtcgtgttggtgagacacacgaccgtg |
241 |
Q |
| |
|
| |||||| || ||||||||||||||||||||| ||||||| ||||| |||||| |
|
|
| T |
15105903 |
aacattaaaaactgactgcataacgtgcacggtcgtcctggtgaggcacacaaccgtg |
15105846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 36709936 - 36710000
Alignment:
| Q |
177 |
agttttcagcattaacttatggctgcataacgtgcacggtcgtgttggtgagacacacgaccgtg |
241 |
Q |
| |
|
|||||||| |||||| | || |||||||||||||||||||||| |||| || ||||| |||||| |
|
|
| T |
36709936 |
agttttcatcattaatatttgactgcataacgtgcacggtcgtgctggtaaggcacacaaccgtg |
36710000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 35104488 - 35104553
Alignment:
| Q |
94 |
gtctgatatgagccctatatacagcttataaccttagacaaggcattaaactcgcattacaaggca |
159 |
Q |
| |
|
|||||||||||||||||| || ||| |||||||||||||||| ||||| ||| ||||||| |||| |
|
|
| T |
35104488 |
gtctgatatgagccctatttatagcctataaccttagacaagacattagactatcattacatggca |
35104553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University