View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10692_low_3 (Length: 268)
Name: NF10692_low_3
Description: NF10692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10692_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 26864844 - 26864601
Alignment:
| Q |
1 |
aacaaccacgttgtggctgtcgccggcgatggcagatttggtggttggtgaacgggacgccggcggtgatgacggtggtacacatcgaagcgcgacgagg |
100 |
Q |
| |
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|||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
26864844 |
aacagccacgttgtggccgtcgtcggcgatggcagatttggtggttggtgaacgggacgccggcggtgatgactgtggtacacatcgtagcgcgacgagg |
26864745 |
T |
|
| Q |
101 |
tcgatggcgatgacttgataactgggtttgtgacgtttcttgttctctttcactgtttctaatttttcaaaagaagtgattttttccccttgaatttgtt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
26864744 |
tcgatggcgatgacttgataactgggtttgtgacgtttcttgttctctttcattgtttctaatttttcgaaagaagtgatttcttccccttgaatttgtt |
26864645 |
T |
|
| Q |
201 |
ttacgacgttgtttttgaatctgctatggggtttgtgttgttcg |
244 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26864644 |
ttacggtgttgtttttgaatctgctatggggtttgtgttgttcg |
26864601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 20723379 - 20723243
Alignment:
| Q |
1 |
aacaaccacgttgtggctgtcgccggcgatggcagatttggtggttggtgaacgggacgccggcggtgatgacggtggtacacatcgaagcgcgacgagg |
100 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
20723379 |
aacagccacgttgtggctgttgccggcgatggcagatttggtggttggtgaacgggacgccggcggtgatgacggtggtgcacatcgtagcgcgacgagg |
20723280 |
T |
|
| Q |
101 |
tcgatggcgatgacttgataactgggtttgtgacgtt |
137 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
20723279 |
tcgatggcgatgacttgataactgggtttgtgacgtt |
20723243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 48333601 - 48333493
Alignment:
| Q |
1 |
aacaaccacgttgtggctgtcgccggcgatggcagatttggtggttggtgaacgggacgccggcggtgatgacggtggtacacatcgaagcgcgacgagg |
100 |
Q |
| |
|
|||| |||| |||||||||||| || ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||| | ||||||| |||| |
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| T |
48333601 |
aacagccactttgtggctgtcgtcgacgatggcagatttggtggttggtgaaccggacgctggcggtgatgacggtggtgcacatggtagcgcgatgagg |
48333502 |
T |
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| Q |
101 |
tcgatggcg |
109 |
Q |
| |
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|| |||||| |
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| T |
48333501 |
tcaatggcg |
48333493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 20723248 - 20723204
Alignment:
| Q |
205 |
gacgttgtttttgaatctgctatggggtttgtgttgttcggccct |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20723248 |
gacgttgtttttgaatctgctatggggtttgtgttgttcggccct |
20723204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 20897199 - 20896981
Alignment:
| Q |
25 |
ggcgatggcagatttggtggttggtgaacgggacgccggcggtgatgacggtggtacacatcgaagcgcgacgaggtcgatggcgatgacttgataactg |
124 |
Q |
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||||||||||||||||||||||||||||||||||| || | ||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||||| || |
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| T |
20897199 |
ggcgatggcagatttggtggttggtgaacgggacgacgacagtgataacggtggtgcacatcgtagcacgacgaggtcgatggcgatgacttgataaatg |
20897100 |
T |
|
| Q |
125 |
ggtttgtgacgtttcttgttctctttcactgtttctaatttttcaaaagaagtgattttttccccttgaatttgttttacgacgttgtttttgaatctgc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| |||||||||||| ||||||||| ||| |||||| |||||| |
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| T |
20897099 |
ggtttgtgacgtttcttgttctctttcattgtctctaatttttcgaaagaagtgatttcttccccttgaatatgttttacggtgttatttttggatctgc |
20897000 |
T |
|
| Q |
225 |
tat-ggggtttgtgttgtt |
242 |
Q |
| |
|
||| ||||||||||||||| |
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|
| T |
20896999 |
tatgggggtttgtgttgtt |
20896981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 1972987 - 1973065
Alignment:
| Q |
1 |
aacaaccacgttgtggctgtcgccggcgatggcagatttggtggttggtgaacgggacgccggcggtgatgacggtggt |
79 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1972987 |
aacaaccactttgtggctgtcgtcggcgatggcagatttggtggttggtgaaccggacgccggcggtgatgacggtggt |
1973065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 12048853 - 12049074
Alignment:
| Q |
1 |
aacaaccacgttgtggctgtcgccggcgatggcagatttggtggttggtgaacgggacgccggcggtgatgacggtggtacacatcgaagcgcgacgagg |
100 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||| |||||| ||||||||||| | |||| ||| ||||||||||||||| | ||| | |||||||||||| |
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| T |
12048853 |
aacagccaggttgtggctgtcgccgacgatggaagatttagtggttggtgacccggacaccgatggtgatgacggtggtgc-catggtagcgcgacgagg |
12048951 |
T |
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| Q |
101 |
tcgatggcga------------------tgacttgataactgggtttgtgacgtttcttgttctctttcactgtttctaatttttcaaaagaagtga-tt |
181 |
Q |
| |
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|||||||| |||||||||| |||||||||||||||||||||||||||| |||||||| ||||||| |||||||||| || |
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| T |
12048952 |
acgatggcggatgagtgttaatttgcggtgacttgatagctgggtttgtgacgtttcttgttctcttccactgtttataattttctgaaagaagtgattt |
12049051 |
T |
|
| Q |
182 |
ttttccccttgaatttgttttac |
204 |
Q |
| |
|
||||||||||| ||||||||||| |
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|
| T |
12049052 |
ttttccccttgtatttgttttac |
12049074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 46106254 - 46106034
Alignment:
| Q |
1 |
aacaaccacgttgtggctgtcgccggcgatggcagatttggtggttggtgaacgggacgccggcggtgatgacggtggtacacatcgaagcgcgacgagg |
100 |
Q |
| |
|
|||| |||||||||||| ||||||| |||||| |||||| |||||||||||||||||| | || ||||||||||||||| | ||| | |||||||||||| |
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| T |
46106254 |
aacagccacgttgtggccgtcgccgacgatggaagatttagtggttggtgaacgggacactggtggtgatgacggtggtgc-catggtagcgcgacgagg |
46106156 |
T |
|
| Q |
101 |
tcgatggcga------------------tgacttgataactgggtttgtgacgtttcttgttctctttcactgtttctaatttttcaaaagaagtgattt |
182 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| ||||||||||||||| |||||||||||||||| | ||||||||||||| |
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|
| T |
46106155 |
acgatggcggatgggtgttaatttgcggtgacttgatagctgggtttgtgatgtttcttgttctcttccactgtttctaattttccgaaagaagtgattt |
46106056 |
T |
|
| Q |
183 |
tttccccttgaatttgttttac |
204 |
Q |
| |
|
||||||||| ||||||||||| |
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|
| T |
46106055 |
cttccccttgtatttgttttac |
46106034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 204
Target Start/End: Original strand, 25712339 - 25712373
Alignment:
| Q |
170 |
aaagaagtgattttttccccttgaatttgttttac |
204 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |
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|
| T |
25712339 |
aaagaagtgattttttgcccttgaatttgttttac |
25712373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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