View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10693_low_1 (Length: 436)
Name: NF10693_low_1
Description: NF10693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10693_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 23017100 - 23017517
Alignment:
| Q |
1 |
tgtctttccttcattgatattggacaaaaactcatccaaaccttggttattcagcaataccgtctccgctgatgtcacacatccactgcattacaaaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23017100 |
tgtctttccttcattgatattggacaaaaactcatccaaaccttggttattcagcaataccgtctccgctgatgtcacacatccactgcattacaaaaca |
23017199 |
T |
|
| Q |
101 |
aacttagaaactacggtttttacattatcaactacatcatagacnnnnnnnnnnnnnnnnnaaaactcagtatccgactgaagacaaccgtccactagca |
200 |
Q |
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| T |
23017200 |
aacttagaaactacggtttttacattatcaactacatcatagactattttttttttttt--aaaactcagtatccgactgaagacaaccgtccactagca |
23017297 |
T |
|
| Q |
201 |
ggggcctaattgatgctagaacaaagctctacatggattggccccacccaaacatacttagttattaatggaaaaaagtaactaacttgacggaagcata |
300 |
Q |
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| T |
23017298 |
ggggcctaattgatgctagaacaaagctctacatggattggccccacccaaacatacttagttattaatggaaaaaagtaactaacttgacggaagcata |
23017397 |
T |
|
| Q |
301 |
acaaaataaaagtggagggggagtaacctgcatgccaagcaatccttgagcgaaattttaacaggtttggacttcacttgtctgtcagcgactttgacct |
400 |
Q |
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| T |
23017398 |
acaaaataaaagtggagggggagtaacctgcatgccaagcaatccttgagcgaaattttaacaggtttggacttcacttgtctgtcagcgactttgacct |
23017497 |
T |
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| Q |
401 |
tcaaataacaaacaagtttc |
420 |
Q |
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| T |
23017498 |
tcaaataacaaacaagtttc |
23017517 |
T |
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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 324 - 391
Target Start/End: Complemental strand, 54913037 - 54912970
Alignment:
| Q |
324 |
taacctgcatgccaagcaatccttgagcgaaattttaacaggtttggacttcacttgtctgtcagcga |
391 |
Q |
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| T |
54913037 |
taacctgcatgccaaacaatccttaagcgaaattttaacaggttctgacttcacttgtctgtcagcga |
54912970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 54914447 - 54914348
Alignment:
| Q |
4 |
ctttccttcattgatattggacaaaaactcatccaaaccttggttattcagcaataccgtctccgctgatgtcacacatccactgcattacaaaacaaac |
103 |
Q |
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|||||||| ||| |||||||||| |||||||||||||||||| || | ||||| |||||||| |||||||| |||||||||||| ||||| |||||||| |
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| T |
54914447 |
ctttcctttattaatattggacagaaactcatccaaaccttgcttctccagcataaccgtctctgctgatgtgacacatccactgtattaccaaacaaac |
54914348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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