View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10693_low_3 (Length: 298)
Name: NF10693_low_3
Description: NF10693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10693_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 34760243 - 34760508
Alignment:
| Q |
18 |
atataaatcttcccaattttcttaaccaaatatagaaactcgttaatgtgcccgatttgttcattctggtatttccgtgagtaggactatggttgctttt |
117 |
Q |
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| T |
34760243 |
atataaatcttcccaattttcttaaccaaatatagaaactcgttaatgtgcccgatttgttcattctgatatatccgtgagtaggactatggttgctttt |
34760342 |
T |
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| Q |
118 |
cagcacaattcacagactgattattaacccatctattatactctttttactcaaaattataagcaaaagtaacaaactatgtaccaattaagaacagcga |
217 |
Q |
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| T |
34760343 |
cagcacaattcacagactgattattaacccatctattatactctttttactc--aattataagcaaaagtaacaaactatgtaccaattaagaacggcgg |
34760440 |
T |
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| Q |
218 |
ttgtcctacatgtacagtggtaaaagactgcagagatatttgatatgttgggtcacgtgttcgatcct |
285 |
Q |
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| T |
34760441 |
ttgtcctacaagtacagtggtaaaagactgcagagatatttgatatgttgggtcacgtgttcgatcct |
34760508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 34747786 - 34747954
Alignment:
| Q |
18 |
atataaatcttcccaattttcttaaccaaatatagaaactcgttaatgtgcccgatttgttcattctggtatttccgtgagtaggactatggttgctttt |
117 |
Q |
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||||||||||||||||||| |||||| |||| ||||||||||||||||||||| || ||||||||| ||| ||||||||||||| ||||||||||||| |
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| T |
34747786 |
atataaatcttcccaatttgcttaactgaataaagaaactcgttaatgtgcccgtttagttcattctaatatatccgtgagtaggattatggttgctttt |
34747885 |
T |
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| Q |
118 |
cagcacaattcacagactgattattaacccatctattatactctttttactcaaaattataagcaaaagta |
188 |
Q |
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| T |
34747886 |
cagtgcaattcatagactgattattaacccatccattatactctttttactc--aattataagcacaagta |
34747954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 34752389 - 34752451
Alignment:
| Q |
22 |
aaatcttcccaattttcttaaccaaatatagaaactcgttaatgtgcccgatttgttcattct |
84 |
Q |
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|||||||| |||| | |||||||||| |||||||| | ||||||||||| ||| ||||||||| |
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| T |
34752389 |
aaatcttctcaatctgcttaaccaaaaatagaaacccattaatgtgcccaattagttcattct |
34752451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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