View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10693_low_6 (Length: 231)
Name: NF10693_low_6
Description: NF10693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10693_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 39471092 - 39470878
Alignment:
| Q |
1 |
ctctacacgaagtcatctattcctgttcctaaagaaaggnnnnnnnnnnncaggtatatcaaagaacaattcagagaaacagtaactcacactgagtaag |
100 |
Q |
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| T |
39471092 |
ctctacacgaattcatctattcctgttcctaaagaaaggaaaaaaaaaa-caggtatatcaaagaacaattcagagaaacagtaactcacactgagtaag |
39470994 |
T |
|
| Q |
101 |
tgtatgtcttgtgctccaacatgaagacagtggaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccgtagagttcgccaagcttct |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39470993 |
tgtatgtcttgtgctccaacatgaagaaagtggaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccttagagttcgccaagcttct |
39470894 |
T |
|
| Q |
201 |
aatcaaccatgataac |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
39470893 |
aatcaaccatgataac |
39470878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 55 - 216
Target Start/End: Complemental strand, 39464816 - 39464655
Alignment:
| Q |
55 |
tatatcaaagaacaattcagagaaacagtaactcacactgagtaagtgtatgtcttgtgctccaacatgaagacagtggaagtggtgtttatcccttttc |
154 |
Q |
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| T |
39464816 |
tatatcaaacaacaattcagaaaaacatcaactcaaaccgagtaagtgcatgtcctgtgcttcaaaatgaagaaagcagaagtagtgtttatcccttttc |
39464717 |
T |
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| Q |
155 |
ccgctgtaggtcatctagtttctgccgtagagttcgccaagcttctaatcaaccatgataac |
216 |
Q |
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| T |
39464716 |
ccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaaccgtgataac |
39464655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 215
Target Start/End: Original strand, 39460139 - 39460297
Alignment:
| Q |
54 |
gtatatcaaagaacaattcagagaaacagtaactcacactgagtaagtgtatgtcttgtgctccaacatgaagacagtggaagtggtgtttatccctttt |
153 |
Q |
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| T |
39460139 |
gtatatcaaagaacaattcaaa-aaacagtaacttaca--gagtaagggtatatcctgtgctccaagatgaagaaagcagaagttgtgtttatccctttt |
39460235 |
T |
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| Q |
154 |
cccgctgtaggtcatctagtttctgccgtagagttcgccaagcttctaatcaaccatgataa |
215 |
Q |
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|||| | | ||||||| ||| || | |||||||| |||||||||| ||||| |||||| |
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| T |
39460236 |
cccggtccgagccatctagattccacccttgagttcgcaaagcttctaaccaaccgtgataa |
39460297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 39471978 - 39472084
Alignment:
| Q |
110 |
tgtgctccaacatgaagacagtggaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccgtagagttcgccaagcttctaatcaacca |
209 |
Q |
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|||||||||| ||||||| || |||||||||||| |||||||||| |||| |||||| |||||||||| | ||||| || |||||||||||||||| |
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| T |
39471978 |
tgtgctccaagatgaagaaagcagaagtggtgtttgtcccttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccg |
39472077 |
T |
|
| Q |
210 |
tgataac |
216 |
Q |
| |
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||||||| |
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| T |
39472078 |
tgataac |
39472084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 216
Target Start/End: Original strand, 39454588 - 39454687
Alignment:
| Q |
117 |
caacatgaagacagtggaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccgtagagttcgccaagcttctaatcaaccatgataac |
216 |
Q |
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||||||||||| || ||||||||||||||||||| ||| | ||| || ||| ||||||| || | |||||||| || ||||||||||||| ||||||| |
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| T |
39454588 |
caacatgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttccacccttgagttcgcgaaacttctaatcaaccgtgataac |
39454687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 39450942 - 39451048
Alignment:
| Q |
110 |
tgtgctccaacatgaagacagtggaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccgtagagttcgccaagcttctaatcaacca |
209 |
Q |
| |
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|||||| ||| ||||||| || ||||||||||||||||||||||| | ||| | ||||||||||| || | || ||||| |||||||||||||| | |
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| T |
39450942 |
tgtgcttcaagatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaatcg |
39451041 |
T |
|
| Q |
210 |
tgataac |
216 |
Q |
| |
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||||||| |
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| T |
39451042 |
tgataac |
39451048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 39480338 - 39480421
Alignment:
| Q |
133 |
gaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccgtagagttcgccaagcttctaatcaaccatgataac |
216 |
Q |
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||||||||| ||||||||| || | ||| |||||||||||||| || | || ||||| |||||||||||||||| ||||||| |
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| T |
39480338 |
gaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgataac |
39480421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 39486406 - 39486507
Alignment:
| Q |
115 |
tccaacatgaagacagtggaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccgtagagttcgccaagcttctaatcaaccatgata |
214 |
Q |
| |
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||||| ||||||| || ||||||||| ||||||||| || | ||| |||||||||||||| || | || || || |||||||||||||||| ||||| |
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| T |
39486406 |
tccaagatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaatttgcaaagcttctaatcaaccgtgata |
39486505 |
T |
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| Q |
215 |
ac |
216 |
Q |
| |
|
|| |
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|
| T |
39486506 |
ac |
39486507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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