View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10693_low_7 (Length: 227)
Name: NF10693_low_7
Description: NF10693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10693_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 17688093 - 17687941
Alignment:
| Q |
30 |
ttataagtttgtcccaaataaagaaattaaattacatatcggatttgattataaatatgcttgagaacatgtaagtagttgaagaacatttataatcaaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17688093 |
ttataagtttgtcccaaataaagaaattaaattacatatcggatttgattataaatatgcttaagaacatgtaagtagtagaagaacatttataatcaaa |
17687994 |
T |
|
| Q |
130 |
cagaaatatgaggttagttcttcttgagcacattgatggagatattccatcaa |
182 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
17687993 |
cagaaagatgaggttagtttttcttgagcacattgatggagatattccatcaa |
17687941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 37983335 - 37983184
Alignment:
| Q |
30 |
ttataagtttgtcccaaataaagaaattaaattacatatcggatttgattataaatatgcttgagaacatgtaagtagttgaagaacatttataatcaaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37983335 |
ttataagtttgtcccaaataaagaaattaaattacatatcggatttgattataaa-atgcttaggaacatgtaagtagtagaagaacatttataatcaaa |
37983237 |
T |
|
| Q |
130 |
cagaaatatgaggttagttcttcttgagcacattgatggagatattccatcaa |
182 |
Q |
| |
|
|||||| |||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
37983236 |
cagaaagatgaggttagtttttattgagcacattgatggagatattccatcaa |
37983184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 17687926 - 17687878
Alignment:
| Q |
51 |
agaaattaaattacatatcggatttgattataaatatgcttgagaacat |
99 |
Q |
| |
|
|||||||||| |||||| | ||||||||||||||| ||||| ||||||| |
|
|
| T |
17687926 |
agaaattaaactacataccagatttgattataaatgtgcttaagaacat |
17687878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 37983169 - 37983121
Alignment:
| Q |
51 |
agaaattaaattacatatcggatttgattataaatatgcttgagaacat |
99 |
Q |
| |
|
|||||||||| |||||| | ||||||||||||||| ||||| ||||||| |
|
|
| T |
37983169 |
agaaattaaactacataccagatttgattataaatgtgcttaagaacat |
37983121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 22000760 - 22000912
Alignment:
| Q |
30 |
ttataagtttgtcccaaataaagaaattaaattacatatcggatttgattataaatatgcttgagaacatgtaagtagttgaagaacatttataatcaaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22000760 |
ttataagtttgtcccaaataaagaaattaaattacatatcggatttgattataaatatacttaagaacatgtaagtagtagaagaacatttataatcaaa |
22000859 |
T |
|
| Q |
130 |
cagaaatatgaggttagttcttcttgagcacattgatggagatattccatcaa |
182 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22000860 |
cagaaagatgaggttagtttttcttgagcacattgatggagatattccatcaa |
22000912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University