View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10693_low_8 (Length: 223)

Name: NF10693_low_8
Description: NF10693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10693_low_8
NF10693_low_8
[»] chr7 (2 HSPs)
chr7 (112-209)||(6376909-6377006)
chr7 (122-209)||(6368454-6368541)
[»] chr6 (1 HSPs)
chr6 (133-209)||(6557755-6557831)


Alignment Details
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 6376909 - 6377006
Alignment:
Q  112 gcatagttagaggatgaagagttacccttgatagaaggcaaatcatggactgcatctgatttctaccaaccgagtctccaacaaaagccatagatttt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6376909 gcatagttagaggatgaagagttacccttgatagaaggcaaatcatggactgcatctgatttctaccaactgagtctccaacaaaagccatagatttt 6377006  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 6368454 - 6368541
Alignment:
Q  122 aggatgaagagttacccttgatagaaggcaaatcatggactgcatctgatttctaccaaccgagtctccaacaaaagccatagatttt 209  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6368454 aggatgaagtgttacccttgatagtaggcaaatcatggactgcatctgatttctaccaactgagtctccaacaaaagccatagatttt 6368541  T

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Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 6557755 - 6557831
Alignment:
Q  133 ttacccttgatagaaggcaaatcatggactgcatctgatttctaccaaccgagtctccaacaaaagccatagatttt 209  Q
    |||||||||||||||| |||||||  |||||||| |||||||||||||| || ||||||||||||||||||||||||    
T  6557755 ttacccttgatagaagacaaatcaatgactgcatgtgatttctaccaacagaatctccaacaaaagccatagatttt 6557831  T

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