View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10694_low_1 (Length: 455)
Name: NF10694_low_1
Description: NF10694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10694_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 14559910 - 14559482
Alignment:
| Q |
18 |
caatggagttgcattaggccgaggaacttgttgttaaggctgattaagtgatcttggcagctttcttttaacatttgtcaagacagtagttgttgttttt |
117 |
Q |
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| T |
14559910 |
caatggagttgcattaggccgaggaacttgttgttgaggctgattaagtgatcttggcagctttcttttaacatttgtcaagacagtagttgttgttttt |
14559811 |
T |
|
| Q |
118 |
ccagaatcaggtgttggagcagcagttggttttggttcatcagttgatgctgaggcaaacttgttgagtagattaacaccagatacatatttccttggta |
217 |
Q |
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| T |
14559810 |
ccagaatcaggtgttggagcagcagttggttttggttcatcagttgatgctgaggcaaacttgttgagtagattaacaccagatacatatttccttggta |
14559711 |
T |
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| Q |
218 |
ttagattcaatggacatattctattttgttgattaactgaaggatttgtcttattttgaagagattggttggaaaaatttagctggttcagtgtaactga |
317 |
Q |
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| T |
14559710 |
ttagattcaatggacatattctattttgttgattaactgaaggatttgtcttattttgaagagattggttggaaaaatttagctggttcagtgtaactga |
14559611 |
T |
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| Q |
318 |
agtgatatctgcaagtggtgttaaagaaggggaactttttatatcaagtgattttttattgactttggaactggaaacctctttctttgttgtcttttgt |
417 |
Q |
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| T |
14559610 |
agtgatatctgcaagtggtgttaaagaaggggaactttttatatcaagtgattttttattgactttggaactggaaacctctttctttgttgtcttttgt |
14559511 |
T |
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| Q |
418 |
ttagcaaattgggacaatctctttcttct |
446 |
Q |
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| T |
14559510 |
ttagcaaattgggacaatctctttcttct |
14559482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 75 - 445
Target Start/End: Complemental strand, 19768505 - 19768135
Alignment:
| Q |
75 |
cagctttcttttaacatttgtcaagacagtagttgttgtttttccagaatcaggtgttggagcagcagttggttttggttcatcagttgatgctgaggca |
174 |
Q |
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| T |
19768505 |
cagctttcttttaacatttgtcaagacagtagttgttgtttttccagaatcaggtgttggagcagcagttggttttggttcatcagttgatactgaggca |
19768406 |
T |
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| Q |
175 |
aacttgttgagtagattaacaccagatacatatttccttggtattagattcaatggacatattctattttgttgattaactgaaggatttgtcttatttt |
274 |
Q |
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| T |
19768405 |
aacttgttgagtagattaacaccagatacatatttccttggtattaggttcaatggacatattctattttgttgattaactgaaggatttgtcttatttt |
19768306 |
T |
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| Q |
275 |
gaagagattggttggaaaaatttagctggttcagtgtaactgaagtgatatctgcaagtggtgttaaagaaggggaactttttatatcaagtgatttttt |
374 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
19768305 |
aaagagattggttggaagaattttgctggttcagtgtaactgaagtgatatctgcaagtggtgttaaagaatgagaactttttatatcaagtgatttttt |
19768206 |
T |
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| Q |
375 |
attgactttggaactggaaacctctttctttgttgtcttttgtttagcaaattgggacaatctctttcttc |
445 |
Q |
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| T |
19768205 |
attgactttggaactggaaacctctttctttgatgtcttttgtttagcaacttgggacaatctctttcttc |
19768135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 19771029 - 19770992
Alignment:
| Q |
44 |
cttgttgttaaggctgattaagtgatcttggcagcttt |
81 |
Q |
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| T |
19771029 |
cttgttgttgaggctgattaagtgatcttggcagcttt |
19770992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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