View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10694_low_11 (Length: 253)
Name: NF10694_low_11
Description: NF10694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10694_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 42192709 - 42192480
Alignment:
| Q |
18 |
cgaagaaccgaaacaataagttgagccgtggtcgaatccaaaccggaagttggttcatccaaaaacaacaaactcgggttcaccaacatttcttgcccaa |
117 |
Q |
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| T |
42192709 |
cgaagaaccgaaacaataagttgagctgtggtcgaatccaaacctgaagttggttcatccaaaaacaacaaactcgggttcaccaacatttcttgcccaa |
42192610 |
T |
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| Q |
118 |
tactcatcctttttctctccccaccggagattccccggaaaagccccatacatcctccaacaggagtgttccggcaccgcgttaggcctagctcggtgat |
217 |
Q |
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| T |
42192609 |
tactcatcctttttctttctccaccggagattccccggaaaagtcccatacagccgccaacctgagtgttccggcaccgcgttaggccgagctcggtgat |
42192510 |
T |
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| Q |
218 |
tatcctctccgcgtgttcgacctttgcttc |
247 |
Q |
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| T |
42192509 |
tatcctctccgcgtgttcgaccttttcttc |
42192480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 142
Target Start/End: Complemental strand, 33718671 - 33718580
Alignment:
| Q |
51 |
gaatccaaaccggaagttggttcatccaaaaacaacaaactcgggttcaccaacatttcttgcccaatactcatcctttttctctccccacc |
142 |
Q |
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||||||||||| |||||||||||||| | |||||||||||| || || | | || |||||| |||||||| | |||||| ||||| ||||| |
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| T |
33718671 |
gaatccaaaccagaagttggttcatcaagaaacaacaaactaggatttataagcaattcttgtccaatactaacccttttcctctctccacc |
33718580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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