View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10694_low_18 (Length: 205)
Name: NF10694_low_18
Description: NF10694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10694_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 14020658 - 14020708
Alignment:
| Q |
15 |
atgaactaagtgttcttttaggacacggatgatggagaactagctggaaca |
65 |
Q |
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| T |
14020658 |
atgaactaagtgttcttttaggttacggatgatggagaactagctggaaca |
14020708 |
T |
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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 14044861 - 14044896
Alignment:
| Q |
39 |
acggatgatggagaactagctggaacataactgaat |
74 |
Q |
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| T |
14044861 |
acggatgatggagaactagctggaacataactgaat |
14044896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 14044927 - 14044959
Alignment:
| Q |
79 |
aaagaaaatcagaacatatatgacattaaatgt |
111 |
Q |
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| T |
14044927 |
aaagaaaatcagaacatatatgacatttaatgt |
14044959 |
T |
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