View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10694_low_3 (Length: 410)
Name: NF10694_low_3
Description: NF10694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10694_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 29 - 405
Target Start/End: Complemental strand, 44085090 - 44084708
Alignment:
| Q |
29 |
tgcagtggcaataattaatatacaagtttagaagat---gtctgttttttgttatcaaatgacactgttacaatacttaattggttcttctatttgtttg |
125 |
Q |
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| T |
44085090 |
tgcagtggcaataattaatatacaagtttagaagatcatgtctgttttttgttatcaaatgacactgttacaatacttaattggttcttctatttgtttg |
44084991 |
T |
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| Q |
126 |
atcatgcaagttatataaagtttgtttggcaagtttataaaagaattttaactttttgttgaaatttttaaggctgagaattgagtggtaattataataa |
225 |
Q |
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| T |
44084990 |
attatgcaagttatataatatttgtttggaaagtttataaaagaattttaacattttgttgaaatttttaaggctgagaattgagtggtaattattataa |
44084891 |
T |
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| Q |
226 |
cct--actta-catgccagactcatttctgtttctttttccctccaccggatataatctagtcgagacaatgtcatattggaaatgtggacacttcttcc |
322 |
Q |
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| T |
44084890 |
ctttggtttattattccctactcatttctgtttctttttccctccaccggatataatctagtcgagacaatgtcatattggaaatgtggacacttcttcc |
44084791 |
T |
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| Q |
323 |
gattaaaatttgaattttaattgtcgtattgtcataatctaattctttggcacctctttcatcttattattcttcttctcact |
405 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44084790 |
gattaaaattttaattttaattgtcgtattgtcataatctaattctttggcacctctttcatcttattattcttcttcacact |
44084708 |
T |
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