View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10694_low_4 (Length: 373)
Name: NF10694_low_4
Description: NF10694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10694_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 45641946 - 45642159
Alignment:
| Q |
18 |
attgttatttataaaattagcaactgaaacacaagtctttgttactgttgttcagttggattgagtggcatgctctgattcttatgtatatgtttttgag |
117 |
Q |
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| T |
45641946 |
attgttatttataaaattagcaactgaaacacaagtctttgttactgtcgttcagttggattgagtggcatgctctgattcttatgtatatgtttttgag |
45642045 |
T |
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| Q |
118 |
gatatatgttaatgcctcacatattttaatcttcatatatttggaaagctgtagagaacttagaaacaaaatttgcattctggattgtatacttgggtca |
217 |
Q |
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| T |
45642046 |
gatatatgttaatgcctcacatattttaatcttcatatatttggaaagctgtagagaacttagaaacaaaatttgcattctggattgtatacttggctca |
45642145 |
T |
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| Q |
218 |
tagattggtatggc |
231 |
Q |
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|||||||||||||| |
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| T |
45642146 |
tagattggtatggc |
45642159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 294 - 358
Target Start/End: Original strand, 45642222 - 45642286
Alignment:
| Q |
294 |
gactgatgacattaaagggttccaatgataataactatgcaatcagtattctattgttctctgct |
358 |
Q |
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| T |
45642222 |
gactgatgacattaaagggttccaatgataataactatgcaatcagtattctattgttctctgct |
45642286 |
T |
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