View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10694_low_6 (Length: 282)
Name: NF10694_low_6
Description: NF10694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10694_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 6732665 - 6732405
Alignment:
| Q |
1 |
tacaaaacaataaataaaacgtgaacgcggaacaagtacgacaaaaccaagaaactacaacgaaatgtaggcaaaggtaaagtggggtaaaatgaatacc |
100 |
Q |
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| T |
6732665 |
tacaaaacaataaataaaacgtgaacgcggaactagtacgacaaaaccaagaaactacaacgaaatgtaggcaaaggtaaagtggggtaaaatgaagacc |
6732566 |
T |
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| Q |
101 |
aaaaatcacaatctctatctataaataacttgagttcatgagttttctttctcatccaatgctagaaaacatttgtttgattccacaaaaacaacaaaac |
200 |
Q |
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| T |
6732565 |
aaaaatcacaatctctatctataaataacttgagttgatgagttttttttttc-tcaa-----aacatacatttgtttgattccacaaaaacaacaaaac |
6732472 |
T |
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| Q |
201 |
acattattacttgcatagttatggctgagctagtgggtggagctgttgttggagctgtggtgggaga |
267 |
Q |
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| T |
6732471 |
acattattacttgcacagttatgggtgatctagtgggtggagctgtcgttggagctgtggtgggaga |
6732405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 6763561 - 6763494
Alignment:
| Q |
118 |
tctataaataacttgagttcatgagttttctttctcatccaatgctagaaaacatttgtttgattccac |
186 |
Q |
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| T |
6763561 |
tctataaataacttgagttcatgtgttttctt-ctcatccaatgctagaaaacatttgtttgattccac |
6763494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 6762964 - 6762904
Alignment:
| Q |
118 |
tctataaataacttgagttcatgagttttctttctcatccaatgc---tagaaaacatttg |
175 |
Q |
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| T |
6762964 |
tctataaataacttgagttcattagttttttttctcatccgatgctcgtagaaaacatttg |
6762904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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