View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10695_high_4 (Length: 262)
Name: NF10695_high_4
Description: NF10695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10695_high_4 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 99 - 247
Target Start/End: Complemental strand, 33045629 - 33045483
Alignment:
| Q |
99 |
ttttacatttcgaaacttgaacatatgaaatcttgtgtctcaannnnnnnnnnnnnnggttacaaagctaaaagtaacaaacagaaataaagcaggaagg |
198 |
Q |
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| T |
33045629 |
ttttacatttcgaaacttgaacatatgaaatcttgt--ctcaatttttttcttttttgattacaaagctaaaaataacaaacagaaagaaagcaggaagg |
33045532 |
T |
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| Q |
199 |
caaacagaaaaactcaagctgttggaaagtaaactcccattgcatcgtt |
247 |
Q |
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| T |
33045531 |
caaacagaaaaactcaagctgttggaaagtaaactcccattgcatcgtt |
33045483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 33045710 - 33045668
Alignment:
| Q |
53 |
tgtttaattttgatgtagctgctttttctttgtatttggatct |
95 |
Q |
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| T |
33045710 |
tgtttaattttgatgtagctgctttttctttgtatttggatct |
33045668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 247
Target Start/End: Original strand, 34686173 - 34686261
Alignment:
| Q |
157 |
gttacaaagctaaaagtaacaaacagaaataaagcaggaaggcaaacagaaaaactcaagctgttggaaagtaaactcccattgcatcgtt |
247 |
Q |
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| T |
34686173 |
gttacaaagctaaaa-taacaaacaaaaagcaaccaggaagaaaaacagaaaa-ctcaagctctttgaaagaaaactcccattgcatcgtt |
34686261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 32723350 - 32723390
Alignment:
| Q |
200 |
aaacagaaaaactcaagctgttggaaagtaaactcccattg |
240 |
Q |
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| T |
32723350 |
aaacagaaaaactcaagctcttggaaagaaaactctcattg |
32723390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 66029 - 65979
Alignment:
| Q |
200 |
aaacagaaaaactcaagctgttggaaagtaaa---ctcccattgcatcgtt |
247 |
Q |
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| T |
66029 |
aaacagaaaaactcaagctcttggaaagaaaactcctcccattgcatcgtt |
65979 |
T |
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