View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10695_low_2 (Length: 539)
Name: NF10695_low_2
Description: NF10695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10695_low_2 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: scaffold0085 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 19 - 529
Target Start/End: Complemental strand, 52897 - 52387
Alignment:
| Q |
19 |
tgtaggaatgactatttcctgttgattcaagccataaattagtagcatccatctaactactttagaagcaaaactcggacaaattacttccttttatgta |
118 |
Q |
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| T |
52897 |
tgtaggaatgactatttcctgttgattcaagccataaattagtagcatccatcaaactactttagaagcaaaactcagacaaattacttccttttatgta |
52798 |
T |
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| Q |
119 |
ttctatataatgttattataaatatcaggaagcattcttttgaatccttgcacaatgatcttccattgaaaaacagcaaatcgcgaagttcaacataaaa |
218 |
Q |
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| T |
52797 |
ttatatataatattattataaatatcaggaagcattcctttgaatccttgcacaatgatcttccattaaaaaacagcaaatcgcgaagttcaacataaaa |
52698 |
T |
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| Q |
219 |
tataaaatatgtcagtgtatactcgaatttgttgtttgtaagaactttctagggttactagttgatgaaggaaaagatagtagattataatatagtaaaa |
318 |
Q |
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| T |
52697 |
tataaaatatgtcagtgtatactcgaatttgttgtttggaagaactttctagggttactagttgatgaaggaaaagatagtagattataatacagtaaaa |
52598 |
T |
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| Q |
319 |
gaattgaattttgatatttgacacgactagaaagaaagaagnnnnnnntctcattccagttaatttgataagctggacatccggatcaaaaacttttgct |
418 |
Q |
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| T |
52597 |
gaattgaattttgatatttgacacgactagaaagaaagaagaaaaaaatttcattccaattaatttgataagctggacatccggatcaaaaacttttgct |
52498 |
T |
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| Q |
419 |
atatgcaagtcactgttgcaaaccaatgatatgatccaaaatggtcaattaccgaaagagcctcgggactgttttcttaaatgcttttccttcaagcttt |
518 |
Q |
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| T |
52497 |
atatgcaagtcactgttgcaaaccaatgatatgatccaaaatggtcaattaccgaaagagcctcgggactgttttcttaaatgcttttccttcaagcttt |
52398 |
T |
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| Q |
519 |
agtcgcctatg |
529 |
Q |
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| T |
52397 |
agtcgcctatg |
52387 |
T |
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Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 52171378 - 52171440
Alignment:
| Q |
129 |
tgttattataaatatcaggaagcattcttttgaatccttgcacaatgatcttccattgaaaaa |
191 |
Q |
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| T |
52171378 |
tgttattataaatataaggaagcattcctttgaatccttgcacaacgatcttccattgaaaaa |
52171440 |
T |
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