View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10695_low_3 (Length: 411)
Name: NF10695_low_3
Description: NF10695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10695_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 28 - 408
Target Start/End: Original strand, 46995167 - 46995547
Alignment:
| Q |
28 |
cacagagtaaggatcaaccaacatgtccattcgaaccactataggagaccgcaaccactcttccactaattgtcgcacaactctgtgatcatattttgca |
127 |
Q |
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| T |
46995167 |
cacagagtaaggatcaaccaacatgtccattcgaaccactataggagaccgcaaccactcttccactaattgtcgcacaactctgtgatcatattttgca |
46995266 |
T |
|
| Q |
128 |
atagccagatgaatcttccatgctgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcataaactgaattcccaaaat |
227 |
Q |
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| T |
46995267 |
atagctagatgaatcttccatgatgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcgtaaactgaattcccaaaat |
46995366 |
T |
|
| Q |
228 |
attccttaggaagagacggttccattctcgttcggttgtttatggccaatttgcaagttgttcgttgaccttgttgtaactgacgtgcacgcgttagaca |
327 |
Q |
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| T |
46995367 |
attccttaggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacgagttataga |
46995466 |
T |
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| Q |
328 |
tctccaaactagtgctgataaggattgaaaagaagagattttgtttgtatcagactctttgttagcttttgctttaagttt |
408 |
Q |
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||||||||||||||| ||||| |||||||| ||||||||||| |||| || |||||||||| || |||||||| ||||| |
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| T |
46995467 |
tctccaaactagtgcagataaagattgaaacgaagagattttcgttgtctcgcactctttgtttgcctttgctttgagttt |
46995547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 115 - 411
Target Start/End: Original strand, 46997514 - 46997810
Alignment:
| Q |
115 |
atcatattttgcaatagccagatgaatcttccatgctgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcataaact |
214 |
Q |
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| T |
46997514 |
atcataatttgcaatagccaggtgaatcttccatgctgcccatcctagatcattttccagcaattcccctaccgttgtttcagccctcactgcgtagatg |
46997613 |
T |
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| Q |
215 |
gaattcccaaaatattccttaggaagagacggttccattctcgttcggttgtttatggccaatttgcaagttgttcgttgaccttgttgtaactgacgtg |
314 |
Q |
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| T |
46997614 |
gaattcccaaaatattccttaggaagaggtggttccattctcgttcggttgtttacggccaatttgcaagttgttcgttgaccttgttgtaactgacgtg |
46997713 |
T |
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| Q |
315 |
cacgcgttagacatctccaaactagtgctgataaggattgaaaagaagagattttgtttgtatcagactctttgttagcttttgctttaagtttcgc |
411 |
Q |
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| T |
46997714 |
cacgcgttagagatctccaaactagtgctgataaggattgaaaagaagagattttgtttgtatcagactctttgttagcttttgctttaagtttcgc |
46997810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 122 - 408
Target Start/End: Original strand, 46980447 - 46980733
Alignment:
| Q |
122 |
tttgcaatagccagatgaatcttccatgctgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcataaactgaattcc |
221 |
Q |
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||||||||||||| |||||| |||||||||||| ||||||| |||||||||||||||| ||| || ||||||| |||||| |||||| |||||||| |
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| T |
46980447 |
tttgcaatagccacatgaattttccatgctgcccatcctagatcattctccagcaactctcctaccgtcgtttcagcactcactacataaagtgaattcc |
46980546 |
T |
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| Q |
222 |
caaaatattccttaggaagagacggttccattctcgttcggttgtttatggccaatttgcaagttgttcgttgaccttgttgtaactgacgtgcacgcgt |
321 |
Q |
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||||||||||||||||||||| ||||||||||| |||||||||||| | |||| |||||||||||||| ||||| ||||||| ||||||||| | || |
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| T |
46980547 |
caaaatattccttaggaagaggtggttccattcttgttcggttgtttgtagccattttgcaagttgttctctgaccgtgttgtagttgacgtgcatgagt |
46980646 |
T |
|
| Q |
322 |
tagacatctccaaactagtgctgataaggattgaaaagaagagattttgtttgtatcagactctttgttagcttttgctttaagttt |
408 |
Q |
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|| | |||||||||||| ||||||||| |||||||| ||||| ||||||||||||| ||||||| || || |||||||||||||| |
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| T |
46980647 |
tatagatctccaaactaatgctgataaagattgaaacgaagaaattttgtttgtattagactctgcatttgcctttgctttaagttt |
46980733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 134 - 409
Target Start/End: Original strand, 46974470 - 46974745
Alignment:
| Q |
134 |
agatgaatcttccatgctgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcataaactgaattcccaaaatattcct |
233 |
Q |
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|||||||| |||||||||||| ||||||| ||||||||||||| || ||| || ||||||| ||||| |||| || |||||||||||||||||||| |
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| T |
46974470 |
agatgaattttccatgctgcccatcctagatcattctccagcaattcccctaccgtcgtttcagcactcaccgcatgaagtgaattcccaaaatattcct |
46974569 |
T |
|
| Q |
234 |
taggaagagacggttccattctcgttcggttgtttatggccaatttgcaagttgttcgttgaccttgttgtaactgacgtgcacgcgttagacatctcca |
333 |
Q |
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| T |
46974570 |
tcggaagaggtggttccattctcgttcggttgtttgtagccagtttgcaagttgttctctgaccgtgttgtagttgacgtgcacgagttatagatctcca |
46974669 |
T |
|
| Q |
334 |
aactagtgctgataaggattgaaaagaagagattttgtttgtatcagactctttgttagcttttgctttaagtttc |
409 |
Q |
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||||| ||||||||| |||||||| ||||| ||||| |||||| |||||||| || || |||||||| |||||| |
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| T |
46974670 |
aactaatgctgataaagattgaaacgaagaaatttttcttgtattagactcttcatttgcctttgctttcagtttc |
46974745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 125 - 411
Target Start/End: Original strand, 47001187 - 47001474
Alignment:
| Q |
125 |
gcaatagccagatgaatcttccatgctgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcataaactgaattcccaa |
224 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||| ||||| | |||||| ||| ||||||||||| | ||||| | || |||||||||| |
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| T |
47001187 |
gcaatagccagatgaatcttccatgctgcccatcctaaatcattcctgaacaactcccctactgttgtttcagcaccaactgcgtgaatcgaattcccaa |
47001286 |
T |
|
| Q |
225 |
aatattccttaggaagagacggttccattctcgttcggttgtttatggccaatttgcaagttgttcgttgaccttgttgtaactgacgtgcacgcgttag |
324 |
Q |
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||||||| || ||||||| |||||| ||||| ||||||||||||| | ||| || |||||||||| |||||| |||| |||| |||||| |||| |
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| T |
47001287 |
aatattcatttggaagaggcggttctattctagttcggttgtttaaagacaacttacaagttgttctttgaccgcattgttgttgacatgcacgagttat |
47001386 |
T |
|
| Q |
325 |
acatctccaaactagtgctgataaggattgaaaagaagagattttgtttgtatcagactctttgttagcttttg-ctttaagtttcgc |
411 |
Q |
| |
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| |||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
47001387 |
agatctccaaactagtgctgataaagattgaaacgaagagattttgtttgtatcaaactctttgttagcttttgcctttaagtttcgc |
47001474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 46951211 - 46951281
Alignment:
| Q |
314 |
gcacgcgttagacatctccaaactagtgctgataaggattgaaaagaagagattttgtttgtatcagactc |
384 |
Q |
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| T |
46951211 |
gcacgagttatacctctccaaacatgtgctgataaagattggaatgaagagattttgtttgtattagactc |
46951281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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