View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10695_low_4 (Length: 394)
Name: NF10695_low_4
Description: NF10695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10695_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 30666617 - 30666995
Alignment:
| Q |
1 |
atagtttatagaggaatcatgtgtcaaatttacataccttgatgtttggtagggtcaagaaattcttggtgatgtgaacaacaagcttgtccataaaagc |
100 |
Q |
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| T |
30666617 |
atagtttatagaggaatcatgtgtcaaatttacataccttgatgtttggtagggtcaagaaattcttggtgatgtgaacaacaagcttgtccataaaagc |
30666716 |
T |
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| Q |
101 |
aggagcaatgtaaaatccatccatagtgttgtcaaagttgtacctaaaacaccatcatcacaagttagatcaaaagaaacttcatttacaaaccatagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30666717 |
aggagcaatgtaaaatccatccatagtgttgtcaaagttgtacctaaaacaccatcatcacaggttagatcaaaagaaacttcatttacaaaccatagta |
30666816 |
T |
|
| Q |
201 |
ataaaatcatgagcaaattacgagtatttggttttgaattaacaaattgcgtagcaagtcactcactgtttaagtccagtactaaggtactcataagaac |
300 |
Q |
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| T |
30666817 |
ataaaatcatgagcaaattacgagtatttggttttgaattaacaaaatgcgtagcaagtcactcactgtttaagtccagtactaaggtactcataagaac |
30666916 |
T |
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| Q |
301 |
tcatgactgcataatgagttccagtatcttgtggtgcttggaaaactgaatcaaccataccctttcctcttgtgatgtc |
379 |
Q |
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| T |
30666917 |
tcatgactgcataatgagttccagtatcttgtggtgcttggaaaactgaatcaaccataccctttcctcttgtgatgtc |
30666995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 259 - 379
Target Start/End: Original strand, 34436947 - 34437067
Alignment:
| Q |
259 |
tcactcactgtttaagtccagtactaaggtactcataagaactcatgactgcataatgagttccagtatcttgtggtgcttggaaaactgaatcaaccat |
358 |
Q |
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| T |
34436947 |
tcacttactgtctaagtccagtactaatgtactcataagaactcatgactgcataatgagttccagaatcttgtggtgcttggaaaactgtatcaaccat |
34437046 |
T |
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| Q |
359 |
accctttcctcttgtgatgtc |
379 |
Q |
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|||||| |||||||||||||| |
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| T |
34437047 |
acccttccctcttgtgatgtc |
34437067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 34436457 - 34436585
Alignment:
| Q |
30 |
ttacataccttgatgtttggtagggtcaagaaattcttggtgatgtgaacaacaagcttgtccataaaagcaggagcaatgtaaaatccatccatagtgt |
129 |
Q |
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| T |
34436457 |
ttacataccttgatattaggcagagtcaagaagttcttagtgatgtgtacaacaagcttgtccataaaagcaggtgcaatgtaaaaaccatccatggtgt |
34436556 |
T |
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| Q |
130 |
tgtcaaagttgtacctaaaacaccatcat |
158 |
Q |
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|||||| ||||||||| ||| |||||||| |
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| T |
34436557 |
tgtcaaggttgtacctgaaataccatcat |
34436585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 6854143 - 6854189
Alignment:
| Q |
63 |
ttcttggtgatgtgaacaacaagcttgtccataaaagcaggagcaat |
109 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
6854143 |
ttcttagtgatgtgaacaacaagcttgtccataaatgcaggtgcaat |
6854189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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