View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10695_low_6 (Length: 343)
Name: NF10695_low_6
Description: NF10695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10695_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 40310466 - 40310146
Alignment:
| Q |
18 |
caaaagtctatctgaagtctcttttataggctcaaaacatacaaaatttccagaagagaagtgctctaaacttggaattggattgaaaaatggctcaaac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40310466 |
caaaagtctatctgaagtctcttttataggctcaaaacatacaaaatttccagaagagaagtgctctaaacttggaattggattgaaaaatggctcaaac |
40310367 |
T |
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| Q |
118 |
tcacatttgatattcaatgcctttaatttgttaagcattttattgggatatcttgattctggttctggtattattgtcacattctccacctcttgtacaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40310366 |
tcacatttgatattcaatgcctttaatttgttaagcattttattgggatatcttgattctggttctggtattattgtcacattctccacctcttgtacaa |
40310267 |
T |
|
| Q |
218 |
gtttttccacttcttttagccactcaagaacaatatcattgaccttttgagttttatgatcggttgcttcaattttttcttgtacagaatcacgatttga |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
40310266 |
gtttttccacttcttttagccactcaagaacaatatcattgaccttttgagttttatgatcggttgcttcaattttttcttgtactgaatcatgatttga |
40310167 |
T |
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| Q |
318 |
tattagctttttcttctctct |
338 |
Q |
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||||||||||||||| ||||| |
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| T |
40310166 |
tattagctttttcttttctct |
40310146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 40325746 - 40325604
Alignment:
| Q |
18 |
caaaagtctatctgaagtctcttttataggctcaaaacatacaaaatttccagaagagaagtgctctaaacttggaattggattgaaaaatggctcaaac |
117 |
Q |
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||||||||||||||||| |||||| ||| | | ||||| ||||||||| ||||||||||||| |||||||||||||| ||| || ||||| ||| || |
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| T |
40325746 |
caaaagtctatctgaagcctctttggtagacgcgaaacacacaaaattttcagaagagaagtgttctaaacttggaataggactggaaaatagcttgaat |
40325647 |
T |
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| Q |
118 |
tcacatttgatattcaatgcctttaatttgttaagcattttat |
160 |
Q |
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| T |
40325646 |
tcacatcggatattcaatgcctttaatttgtctagcattttat |
40325604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 40598401 - 40598508
Alignment:
| Q |
27 |
atctgaagtctcttttataggctcaaaacatacaaaatttccagaagagaagtgctctaaacttggaattggattgaaaaatggctcaaactcacatttg |
126 |
Q |
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||||||||||| | | ||| || |||||| | || |||||| |||||||||||||||||||||||||||||| | ||||||| ||||| || ||||| |
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| T |
40598401 |
atctgaagtcttatctctagacttaaaacacaaaatatttcctgaagagaagtgctctaaacttggaattggagttgaaaatggatcaaattcgcatttt |
40598500 |
T |
|
| Q |
127 |
atattcaa |
134 |
Q |
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| |||||| |
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| T |
40598501 |
acattcaa |
40598508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 40257751 - 40257834
Alignment:
| Q |
48 |
ctcaaaacatacaaaatttccagaagagaagtgctctaaacttggaattggattgaaaaatggctcaaactcacatttgatatt |
131 |
Q |
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|||||| |||||||||||||| ||||||||| |||||||| ||||| || | ||||||||||||||||||| ||| |||| |
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| T |
40257751 |
ctcaaagcatacaaaatttccgaaagagaagtactctaaaccaggaatagggctagaaaatggctcaaactcacaattggtatt |
40257834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 40277187 - 40277089
Alignment:
| Q |
27 |
atctgaagtctcttttataggctcaaaacatacaaaatttccagaagagaagtgctctaaacttggaattggattgaaaaatggctcaaactcacattt |
125 |
Q |
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|||||||||||| | | ||| || |||||| | || ||||||| ||| ||||||||||||||||||||| || | ||||||| ||||| |||||||| |
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| T |
40277187 |
atctgaagtctcctctctagacttaaaacacataatatttccattagaaaagtgctctaaacttggaattcgagttgaaaatgggtcaaattcacattt |
40277089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 40598605 - 40598671
Alignment:
| Q |
228 |
ttcttttagccactcaagaacaatatcattgaccttttgagttttatgatcggttgcttcaattttt |
294 |
Q |
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||||||||||||||||| ||| ||| |||||||||| |||||| ||||| |||||||||| |||| |
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| T |
40598605 |
ttcttttagccactcaaacacagcatcgttgaccttttcagttttgtgatcagttgcttcaactttt |
40598671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 40303193 - 40303160
Alignment:
| Q |
21 |
aagtctatctgaagtctcttttataggctcaaaa |
54 |
Q |
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|||||||||||||| ||||||||||||||||||| |
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| T |
40303193 |
aagtctatctgaagcctcttttataggctcaaaa |
40303160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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