View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10695_low_8 (Length: 306)
Name: NF10695_low_8
Description: NF10695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10695_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 26119912 - 26119637
Alignment:
| Q |
19 |
atgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaacagcagagttcttttcaagacggtgaggaacgatgctaacctcagtaa |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
26119912 |
atgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaatagcagagttcttttcaagacagtgaggaacaatgctaacctcagtaa |
26119813 |
T |
|
| Q |
119 |
attgaaaccggtaattattcacgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatattatgttaatgggaaacaagaggctctc |
218 |
Q |
| |
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|||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
26119812 |
attgaaaccggttattattcacttgaattaccaccgtgataagcttacgcgaatgaaagcagttgttgaatattatgttaatgggaaccaagatgctctc |
26119713 |
T |
|
| Q |
219 |
aaaccttttcccgatggcacacctcgataaccttgtttttgtctaagctgttgttcaaaaacttaacgagcacctat |
295 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
26119712 |
aaaccttttcccgatggcacacctcgataaccttg-ttatgtctaagctgttgttcaaaaacttaacgagcacctat |
26119637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 26084350 - 26084077
Alignment:
| Q |
19 |
atgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaacagcagagttcttttcaagacggtgaggaacgatgctaacctcagtaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
26084350 |
atgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaacagcagagttcttttcaggacagtgaggaacgatgctaacctcagtaa |
26084251 |
T |
|
| Q |
119 |
attgaaaccggtaattattcacgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatattatgttaatgggaaacaagaggctctc |
218 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| |
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| T |
26084250 |
attgaaaccggttattattcacgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatactatgttaatgggaaccaagatgctctc |
26084151 |
T |
|
| Q |
219 |
aaaccttttcccgatggcacacctcgataaccttgtt--tttgtctaagctgttgttcaaaaacttaacgagca |
290 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| | ||||| || |||||||| |||||||||| |||| |
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| T |
26084150 |
aaaccttttcccgatggcacacctcgataaccttgtttctatgtcttagttgttgttctaaaacttaaccagca |
26084077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 26096625 - 26096360
Alignment:
| Q |
19 |
atgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaacagcagagttcttttcaagacggtgaggaacgatgctaacctcagtaa |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
26096625 |
atgacgggcttcatgcttctaaaagaactatggatatatatctttttatgaacagcagagttcttttcaggacagtgaggaacgatgctaacctcagtaa |
26096526 |
T |
|
| Q |
119 |
attgaaaccggtaattattcacgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatattatgttaatgggaaacaagaggctctc |
218 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |
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| T |
26096525 |
attgaaaccggtaattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattgttgaatattatgttaatgggaaccaagatgctctc |
26096426 |
T |
|
| Q |
219 |
aaaccttttcccgatggcacacctcgataaccttgtttt--tgtctaagctgttgttcaaaaactt |
282 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
26096425 |
aaaccttttcccgatggcacacctcgataaccttgtttttgtgtctaagttgttgttcaaaaactt |
26096360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 26126569 - 26126291
Alignment:
| Q |
19 |
atgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaacagcagagttcttttcaagacggtgaggaacgatgctaacctcagtaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
26126569 |
atgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaatagtaaagttcttttcaagacagtgaggaacgatgctaaactcagtaa |
26126470 |
T |
|
| Q |
119 |
attgaaaccggtaattattcacgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatattatgttaatgggaaacaagaggctctc |
218 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| |
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| T |
26126469 |
attgaaaccggtaattattcacttgaattaccaccctgataagcttccgcgaatgaaagcagttgttgaatactatgttaatgggaaccaagatgctctc |
26126370 |
T |
|
| Q |
219 |
aaaccttttcccgatggcacacctcgataaccttgtt--tttgtctaagctgttgttcaaaaacttaacgagcacctat |
295 |
Q |
| |
|
|||||||| | |||||||||||| |||||||||||| | ||||| || |||| |||||| ||||||||||||||||| |
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| T |
26126369 |
aaacctttctcggatggcacaccttgataaccttgtttctgtgtcttagttgttcttcaaatacttaacgagcacctat |
26126291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 26064625 - 26064408
Alignment:
| Q |
19 |
atgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaacagcagagttcttttcaagacggtgaggaacgatgctaacctcagtaa |
118 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| || ||||||||||| || | ||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
26064625 |
atgacgggcttcatgctgctaaaaggactatggatatgtacctttttatgaatagtaaagttcttttcaagacagtgaggaacgatgctaaactcagtaa |
26064526 |
T |
|
| Q |
119 |
attgaaaccggtaattattcacgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatattatgttaatgggaaacaagaggctctc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
26064525 |
attgaaaccggtaattattcacgtgaattaccaccctgataagcttccgcgaatgaaagcagttgttgaatattatgttaatgggaaccaagatgctctc |
26064426 |
T |
|
| Q |
219 |
aaaccttttcccgatggc |
236 |
Q |
| |
|
|||||||| || |||||| |
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| T |
26064425 |
aaacctttccctgatggc |
26064408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 26035977 - 26035770
Alignment:
| Q |
19 |
atgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaacagcagagttcttttcaagacggtgaggaacgatgctaacctcagtaa |
118 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||| ||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26035977 |
atgaagggcttcatgctgctagaagaactatggatatgtatctctttatgaacagcaaagttcttttcaagacagtgaggaacgatgctaacctcagtaa |
26035878 |
T |
|
| Q |
119 |
attgaaaccggtaattattcacgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatattatgttaatgggaaacaagaggctctc |
218 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||| |
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| T |
26035877 |
attgaaaccagtaattgttcacgtgaattaccaccctgataagcttccgcgaatgaaagcagttgtcgaatattatgtcaatgggaaacaagatgctctc |
26035778 |
T |
|
| Q |
219 |
aaaccttt |
226 |
Q |
| |
|
|||||||| |
|
|
| T |
26035777 |
aaaccttt |
26035770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 93 - 285
Target Start/End: Complemental strand, 26075682 - 26075488
Alignment:
| Q |
93 |
gtgaggaacgatgctaacctcagtaaattgaaaccggtaattattcacgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatatt |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26075682 |
gtgaggaacgatgctaacctcagtaaattgaaaccggttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcagttgttgaatatt |
26075583 |
T |
|
| Q |
193 |
atgttaatgggaaacaagaggctctcaaaccttttcccgatggcacacctcgataaccttgtt--tttgtctaagctgttgttcaaaaacttaac |
285 |
Q |
| |
|
||||||||||||| |||| ||||| |||||||||||||||||||||| |||||||||||||| | ||||| || |||||||||||||| |||| |
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|
| T |
26075582 |
atgttaatgggaactaagatgctctgaaaccttttcccgatggcacacatcgataaccttgtttctatgtcttagttgttgttcaaaaacataac |
26075488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 6773290 - 6773203
Alignment:
| Q |
27 |
cttcatgctgctaaaagaactatggatatatatctttttatgaacagcagagttcttttcaagacggtgaggaacgatgctaacctca |
114 |
Q |
| |
|
||||||||||| || ||||| |||||||| || |||||||||||||| | ||||| || ||||| ||||| || |||||||| |||| |
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| T |
6773290 |
cttcatgctgcaaagagaacaatggatatgtacctttttatgaacagtaaggttctgtttaagactgtgagaaaagatgctaagctca |
6773203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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