View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10696_high_3 (Length: 250)
Name: NF10696_high_3
Description: NF10696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10696_high_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 52971201 - 52970962
Alignment:
| Q |
11 |
caaaggacgaagatttcacgggtggtggcgttggtctggaagtttttgatttggggtgatgtagaatagcacaaaggtcattctctaaaataatcattac |
110 |
Q |
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| T |
52971201 |
caaaggacgaagatttcacgggtggtggcgttggtctgaaagtttttgatttggggtgatgtagaatagcacaaaggtcattctctaaaataatcattac |
52971102 |
T |
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| Q |
111 |
tttttctaggacagagcttgttttatctaagaagaaaccacttaaactcatggtggtagacaacttgaggattcgatccactgcatctagaaataaattg |
210 |
Q |
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| T |
52971101 |
tttttctaggacagagcttgttttatctaagaagaaaccacttaaactcatggtggtagacaacttgaggattcgatccactgcatctagaaataaattg |
52971002 |
T |
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| Q |
211 |
tcgtcatttagatcttgcccaaacctgcttcttctacctc |
250 |
Q |
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| T |
52971001 |
tcgtcatttagatcttgcccaaacctgcttcttctacctc |
52970962 |
T |
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