View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10696_low_7 (Length: 240)
Name: NF10696_low_7
Description: NF10696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10696_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 30 - 240
Target Start/End: Original strand, 52970472 - 52970682
Alignment:
| Q |
30 |
caatccaatccaacatttaaattgtctggctgcagacaagcaagcaatcttaaattagaatttggagaggtgagtaaaatgaaaacaaatttttcatatt |
129 |
Q |
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| T |
52970472 |
caatccaatccaacatttaaattgtctggctgcagacaagcaagcaatcttaaattagaatttggagaggtgagtaaaatgaaaacaaatttttcatatt |
52970571 |
T |
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| Q |
130 |
aacactgatcatgttattttcatgcaatactcaaatatataattatttctttggtgataataaatatcaatacgctcgtggaggaacaaaattattagta |
229 |
Q |
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| T |
52970572 |
aacactgatcatgttattttcatgcaatactcaaatatataattatttctttggtgataataaatatcaatacgctcgtggaggaacaaaattattagta |
52970671 |
T |
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| Q |
230 |
attacctagac |
240 |
Q |
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| T |
52970672 |
attacctagac |
52970682 |
T |
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