View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10697_high_3 (Length: 357)
Name: NF10697_high_3
Description: NF10697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10697_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 29310718 - 29310372
Alignment:
| Q |
1 |
agaaataaataagaagatgagagagaggggaacgggttggatgcaacatatttccaattcaaacaaataaaaattcgctcattttgaatttttatttgta |
100 |
Q |
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| T |
29310718 |
agaaataaataagaagatgagagagaggggaacgggttggatgcaa-atatttccaattcaaacaaataaaaatacgctcattttgaatttttatttgta |
29310620 |
T |
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| Q |
101 |
attaatttttatcatcgacactcatggcttaccacaactcgactcatcaatacgaacaaaaatttaagattgtccatcaccccaatgacaatggtatttt |
200 |
Q |
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| T |
29310619 |
attagtttttatcatcgacactgatggcttaccacaactggactcatcaacccgaacaaaaaattaagattgttcatcaccccaatgacaatggtatttt |
29310520 |
T |
|
| Q |
201 |
tgccctcatagcaataatggatctaaggtcatgagggtaaagttaccatgcttaaaatggtggacaatctcaaagttttgttcgtcttaacgagtctaat |
300 |
Q |
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| T |
29310519 |
tgccctcatagcaataatggatctaaggtcatgagggtaaagttatcatgctcaaaatggtggacaatctcaaagttttgttcgtcttgatgagtctgat |
29310420 |
T |
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| Q |
301 |
aactgttagtcatctgagacgatgataaagttaattaaaaacaaaaat |
348 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
29310419 |
aactgttagttatctgagacgatgataaagttaattaaaaataaaaat |
29310372 |
T |
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