View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10697_high_6 (Length: 227)

Name: NF10697_high_6
Description: NF10697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10697_high_6
NF10697_high_6
[»] chr4 (4 HSPs)
chr4 (1-134)||(52966017-52966151)
chr4 (183-224)||(52965925-52965966)
chr4 (39-107)||(1182728-1182798)
chr4 (39-123)||(44537854-44537941)
[»] chr3 (4 HSPs)
chr3 (56-121)||(41982602-41982669)
chr3 (1-39)||(46862105-46862143)
chr3 (39-128)||(51040026-51040117)
chr3 (56-121)||(52058729-52058796)
[»] chr6 (2 HSPs)
chr6 (1-43)||(493682-493724)
chr6 (1-42)||(19418860-19418901)
[»] chr8 (4 HSPs)
chr8 (1-41)||(110332-110372)
chr8 (56-121)||(9509072-9509139)
chr8 (1-41)||(17336417-17336457)
chr8 (56-121)||(32887881-32887948)
[»] chr7 (1 HSPs)
chr7 (56-121)||(43958829-43958896)
[»] chr5 (1 HSPs)
chr5 (56-121)||(40524296-40524363)
[»] chr2 (1 HSPs)
chr2 (56-121)||(38030772-38030839)
[»] chr1 (1 HSPs)
chr1 (56-121)||(4155905-4155972)


Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 52966151 - 52966017
Alignment:
Q  1 tttttcaaaaaggtcttataatcagggacgaatgtagtaataatcaatacttactattatgagtattgaaaattcaa-aaaatatattttatttttccga 99  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  52966151 tttttcaaaagggtcttataatcagggacggatgtagtaataatcaatactcactattatgagtagtgaaaattcaaaaaaatatattttatttttccga 52966052  T
Q  100 cacttttgctaaataagatttagtcattaacattg 134  Q
     |||||||||||||| |||||||||||||||||||    
T  52966051 tacttttgctaaatatgatttagtcattaacattg 52966017  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 52965966 - 52965925
Alignment:
Q  183 ctactcaattcttttttggaaactaaaacgattctacttgaa 224  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  52965966 ctactcaattcttttttggaaactaaaacgattctacttgaa 52965925  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 1182798 - 1182728
Alignment:
Q  39 aataatcaatacttactattatgagtattgaaaattcaaaaaatat--attttatttttccgacacttttg 107  Q
    ||||||||||| | ||||||||||||| | |||||| ||||||| |  |||||| ||||||||||||||||    
T  1182798 aataatcaatattcactattatgagtaataaaaattaaaaaaatttgaattttacttttccgacacttttg 1182728  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 44537941 - 44537854
Alignment:
Q  39 aataatcaatactt-actattatgagtattgaaaattcaaaaaatatattttatttttc--cgacacttttgctaaataagatttagt 123  Q
    ||||||||||| || ||||||||||||| | |||||| |||||| |||  || || |||  ||||||||||||||||||| |||||||    
T  44537941 aataatcaatatttcactattatgagtaataaaaattaaaaaaagatagatttttcttcgccgacacttttgctaaataaaatttagt 44537854  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 41982602 - 41982669
Alignment:
Q  56 attatgagtattgaaaattcaaaaaatata--ttttatttttccgacacttttgctaaataagattta 121  Q
    |||||||||| | ||||||||||||| |||  |||||||||  ||||||||||| |||||||||||||    
T  41982602 attatgagtaataaaaattcaaaaaaaataaattttattttgtcgacacttttggtaaataagattta 41982669  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 46862143 - 46862105
Alignment:
Q  1 tttttcaaaaaggtcttataatcagggacgaatgtagta 39  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  46862143 tttttcaaaaaggtcttataattagggacgaaggtagta 46862105  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 51040026 - 51040117
Alignment:
Q  39 aataatcaatacttactattatgagtattgaaaattcaaaaaa--tatattttatttttccgacacttttgctaaataagatttagtcatta 128  Q
    ||||||||||| | ||||||||||||| | ||| |||| ||||  || ||| |||||  |||||| ||||| ||||||||||||||| ||||    
T  51040026 aataatcaatattaactattatgagtaataaaatttcagaaaaattaaattctatttagccgacatttttggtaaataagatttagttatta 51040117  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 52058729 - 52058796
Alignment:
Q  56 attatgagtattgaaaattcaaaaaa--tatattttatttttccgacacttttgctaaataagattta 121  Q
    |||||||||| | |||||||||||||  || |||||||||   ||||||||||| |||||||||||||    
T  52058729 attatgagtaataaaaattcaaaaaaattaaattttatttcgtcgacacttttgataaataagattta 52058796  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 493682 - 493724
Alignment:
Q  1 tttttcaaaaaggtcttataatcagggacgaatgtagtaataa 43  Q
    |||||||||||||||||||| | ||||||||| ||||||||||    
T  493682 tttttcaaaaaggtcttatatttagggacgaaggtagtaataa 493724  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 19418901 - 19418860
Alignment:
Q  1 tttttcaaaaaggtcttataatcagggacgaatgtagtaata 42  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  19418901 tttttcaaaaaggtcttataattagggacagatgtagtaata 19418860  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 110332 - 110372
Alignment:
Q  1 tttttcaaaaaggtcttataatcagggacgaatgtagtaat 41  Q
    |||||||||| |||| |||||| ||||||||||||||||||    
T  110332 tttttcaaaagggtcctataattagggacgaatgtagtaat 110372  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 9509072 - 9509139
Alignment:
Q  56 attatgagtattgaaaattcaaaaaa--tatattttatttttccgacacttttgctaaataagattta 121  Q
    |||||||||| | |||||||||||||  || |||||||||   ||||||||||| |||||||||||||    
T  9509072 attatgagtaataaaaattcaaaaaaattaaattttatttcgtcgacacttttggtaaataagattta 9509139  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 17336457 - 17336417
Alignment:
Q  1 tttttcaaaaaggtcttataatcagggacgaatgtagtaat 41  Q
    |||||||||| ||||||||||| ||||||| ||||||||||    
T  17336457 tttttcaaaagggtcttataattagggacggatgtagtaat 17336417  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 32887881 - 32887948
Alignment:
Q  56 attatgagtattgaaaattcaaaaaa--tatattttatttttccgacacttttgctaaataagattta 121  Q
    |||||||||| | |||||||||||||  || |||||||||   ||||||||||| |||||||||||||    
T  32887881 attatgagtaataaaaattcaaaaaaattaaattttatttcgtcgacacttttggtaaataagattta 32887948  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 43958829 - 43958896
Alignment:
Q  56 attatgagtattgaaaattcaaaaaatata--ttttatttttccgacacttttgctaaataagattta 121  Q
    |||||||||| | ||||||||||||| |||  ||||||||   ||||||||||| |||||||||||||    
T  43958829 attatgagtaataaaaattcaaaaaaaataaattttatttcgtcgacacttttggtaaataagattta 43958896  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 40524296 - 40524363
Alignment:
Q  56 attatgagtattgaaaattcaaaaaa--tatattttatttttccgacacttttgctaaataagattta 121  Q
    |||||||||| | |||||||||||||  || |||||||||   ||||||||||| |||||||||||||    
T  40524296 attatgagtaataaaaattcaaaaaaattaaattttatttcgtcgacacttttggtaaataagattta 40524363  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 38030772 - 38030839
Alignment:
Q  56 attatgagtattgaaaattcaaaaaa--tatattttatttttccgacacttttgctaaataagattta 121  Q
    |||||||||| | |||||||||||||  || |||||||||   ||||||||||| |||||||||||||    
T  38030772 attatgagtaataaaaattcaaaaaaattaaattttatttcgtcgacacttttggtaaataagattta 38030839  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 4155972 - 4155905
Alignment:
Q  56 attatgagtattgaaaattcaaaaaa--tatattttatttttccgacacttttgctaaataagattta 121  Q
    |||||||||| | |||||||||||||  || |||||||||   ||||||||||| |||||||||||||    
T  4155972 attatgagtaataaaaattcaaaaaaattaaattttatttcgtcgacacttttggtaaataagattta 4155905  T

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