View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10697_low_1 (Length: 565)
Name: NF10697_low_1
Description: NF10697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10697_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 184 - 340
Target Start/End: Original strand, 44227272 - 44227429
Alignment:
| Q |
184 |
agctccaagtaataggctttagtttagtttcttgcataataaactacagcagtatcatagtatgttatggtacacatgcaattagctataaatagctttg |
283 |
Q |
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| T |
44227272 |
agctccaagtaataagctttagtttagtttcttgctcaataagctacagcagaaccatagtatgttatggtgttcttgcaattagctatatatagctttg |
44227371 |
T |
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| Q |
284 |
taatcagttgagcacttaagcaaaatcatttca-tttttcagtttcataatatggtat |
340 |
Q |
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| T |
44227372 |
taattacttgaactcttaaagaaaatcatttcattttttcagtttcataatatggtat |
44227429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 184 - 334
Target Start/End: Original strand, 44231571 - 44231722
Alignment:
| Q |
184 |
agctccaagtaataggctttagtttagtttcttgcataataaactacagcagtatcatagtatgttatggtacacatgcaattagctataaatagctttg |
283 |
Q |
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|||||||||||||| ||| ||| |||||||||||| ||||| ||||||||| | ||||||||||||||||| | |||||| ||||||| ||||||||| |
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| T |
44231571 |
agctccaagtaataagctgtagcttagtttcttgctcaataagctacagcagaaccatagtatgttatggtattcttgcaatgagctatatatagctttg |
44231670 |
T |
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| Q |
284 |
taatcagttgagcacttaagcaaaatcatttca-tttttcagtttcataata |
334 |
Q |
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| T |
44231671 |
taattacttgaactcttaaggaaaatcatttcattttttcagtttcataata |
44231722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 286
Target Start/End: Complemental strand, 15885130 - 15885030
Alignment:
| Q |
185 |
gctccaagtaataggctttagtttagtttcttgcataataaactacagcagtatcatagtatgttatggtacacatgcaattagctataaatagctttgt |
284 |
Q |
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| T |
15885130 |
gctccaagtaagagtgtgtagtttagttgtttgcacaataagctactgcagtaccatagtatgttatggtactcatg-atttagctatatatagccttgt |
15885032 |
T |
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| Q |
285 |
aa |
286 |
Q |
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|| |
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| T |
15885031 |
aa |
15885030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 184 - 280
Target Start/End: Original strand, 31356707 - 31356803
Alignment:
| Q |
184 |
agctccaagtaataggctttagtttagtttcttgcataataaactacagcagtatcatagtatgttatggtacacatgcaattagctataaatagct |
280 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||| ||||||||| | |||||||||||||||| | |||||||||||||| |||||| |
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| T |
31356707 |
agctccaagtaataagctttagtttagtttcttgctcaataagctacagcagcaccatagtatgttatggtgttcttgcaattagctatatatagct |
31356803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 31368397 - 31368457
Alignment:
| Q |
274 |
aatagctttgtaatcagttgagcacttaagcaaaatcatttcatttttcagtttcataata |
334 |
Q |
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| T |
31368397 |
aatagctttgtaattacttgaactcttaaggaaaatcatttcatttttcagtttcataata |
31368457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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