View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10697_low_6 (Length: 275)
Name: NF10697_low_6
Description: NF10697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10697_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 52965472 - 52965731
Alignment:
| Q |
17 |
gaaatttacctctaaagtgaataaatgaaaaatcttaaattttaacttagtatgtgtgtgtatatataatacaatttctgtcaaatgagttatgttagga |
116 |
Q |
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| T |
52965472 |
gaaatttacctctaaagtgaataaatgaaaaatcttaaattttaacttagtatgtgtgtgtgtatataatacaatttttgtcaaatgagttatgttagga |
52965571 |
T |
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| Q |
117 |
caaaagactatt-ttttaagcatttacaatgaaatagtttctcaaagtataaattaaatgcttacgagaagttaaataattcaaccgaaaaccaataatc |
215 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52965572 |
caaaagactattgttttaagcatttacaatgaaatagtttctcaaagtataaattaaatgcttacgagaagttaaataattcaaccgaaaaccaataatc |
52965671 |
T |
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| Q |
216 |
tattggtcgaaaacaacagtaacaaaatcatcattggattatttgggtaccgaatcttcc |
275 |
Q |
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| T |
52965672 |
tattggtcgaaaacaacagtaacaaaatcatcattggattatttgggtaccgaatcttcc |
52965731 |
T |
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