View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_high_1 (Length: 605)
Name: NF10698_high_1
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 45 - 588
Target Start/End: Original strand, 4845769 - 4846312
Alignment:
| Q |
45 |
gacaataagccaaagtcatgggggataaaacaacgtttcaaaacagacatatgaaaacatgtgatatgtcctagccattaaattatgaaaagttctgttt |
144 |
Q |
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| T |
4845769 |
gacaataagccaaagtcatgggggataaaacaacgttccaaaacagacatatgaaaacatgtgatatgtcctagccattaaagtatgaaaagttcagttt |
4845868 |
T |
|
| Q |
145 |
ccactattacacaatcatatctcccatttgatggttttggttatataatttccacattgccaattgaataacccctcgagaaaggaaaaaa-taactgag |
243 |
Q |
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| T |
4845869 |
ccactattacacaatcatatctcccatttgatggttttggttatataatttccacattgccaattgaataacccctcgagaaaggaaaaaaataactgag |
4845968 |
T |
|
| Q |
244 |
atgtnnnnnnnnngataaacaataataggaatggtagtagagattgtaaaagaaagagcaagaagactcaagtggaatatgaatatga---gaagataaa |
340 |
Q |
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|||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4845969 |
atgtcaaaaaaaagataaacaataataagaatggtagtaaagattgtaaaaaaaagagcaagaagactcaagtggaatatgaatatgatgagaagataaa |
4846068 |
T |
|
| Q |
341 |
gaacattattaacaaattgaacatagctacatattaactatttgtcgaaatgattagtaaattcatgaccacggttcatatcttcaattaaatctattaa |
440 |
Q |
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||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4846069 |
gaacattattagcaaattgaacatagctacgtattaactatttgtcgaaatgattagtaaattcatgaccatggttcatatcttcaattaaatctattaa |
4846168 |
T |
|
| Q |
441 |
ttcagaagaagagttctagtaccataatataaaatca-tttgattaactacctaaatgattgtttttaaaagtaaagtaaatttgattgcagttgattct |
539 |
Q |
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| T |
4846169 |
ttcagaagaagagttctagtaccataatataaaatcactttgattaactacctaaatgattgttttta-----aaagtaaatttaattgcagttgattct |
4846263 |
T |
|
| Q |
540 |
ccatttagtttgctgctattgaatgacatatggcagcatgacataacaa |
588 |
Q |
| |
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| T |
4846264 |
ccatttagtttgctgctattgaatgacatatggcagcatgacataacaa |
4846312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 589
Target Start/End: Original strand, 38088498 - 38088618
Alignment:
| Q |
463 |
cataatataaaatcatttgattaactacctaaatgattgtttttaaaagtaaagtaaatttgattgcagttgattctcca-tttagtttgctgctattga |
561 |
Q |
| |
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|||||||||||||||| ||| ||| ||||||||||||||||||| |||| | ||||||||||| | |||| | | |||| |||| || |||||| |
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| T |
38088498 |
cataatataaaatcat--gataaaccacctaaatgattgttttta-----aaagcatatttgattgcaatagatttttaattttaatttgatgttattga |
38088590 |
T |
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| Q |
562 |
atgacatatggcagcatgacataacaat |
589 |
Q |
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| T |
38088591 |
atgacatatggcagtatgacaaaacaat |
38088618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 200 - 589
Target Start/End: Complemental strand, 4080776 - 4080391
Alignment:
| Q |
200 |
attgccaattgaataacccctcgagaaaggaaaaaa-taactgagatgtnnnnnnnnngataaacaataataggaatggtagtagagattgtaaaagaaa |
298 |
Q |
| |
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| T |
4080776 |
attgccaatttaataacccctcgagaaaggaaaaaaataactgagatgtcaaaaaaa-gataaacaataataggaatggtagtagaaattgtaaaaaaaa |
4080678 |
T |
|
| Q |
299 |
gagcaagaagactcaagtggaatatgaatatgagaagataaagaacattattaacaaattgaacatagctacatattaactatttgtcgaaatgattagt |
398 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4080677 |
gagcaaaaagactcaagcggaatatgaatatgagaagataaagaacattattagcaaattgaacatagctacatattaactatttgtcgaaatgattagt |
4080578 |
T |
|
| Q |
399 |
aaattcatgaccacggttcatatcttcaattaaatctattaattcagaagaagagttctagtaccataatataaaatca-tttgattaactacctaaatg |
497 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||| |
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| T |
4080577 |
aaattcatgaccacagttcatatcttcaattaaatctattaattcagaagaagagttccagtagcataatataaaatcactttgattaactacctaaatg |
4080478 |
T |
|
| Q |
498 |
attgtttttaaaagtaaagtaaatttgattgcagttgattctccatttagtttgctgctattgaatgacatatggcagcatgacataacaat |
589 |
Q |
| |
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| T |
4080477 |
attgttttta-----aaagtaaatttgattgcagttgattctccatttagtttgctgctattgaatgacatatggcagcatgacataacaat |
4080391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 463 - 567
Target Start/End: Complemental strand, 11526723 - 11526622
Alignment:
| Q |
463 |
cataatataaaatcattt-gattaacta-cctaaatgattgtttttaaaagtaaagtaaatttgattgcagttgattctccatttagtttgctgctattg |
560 |
Q |
| |
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|||||||||||||||||| ||||||| | |||||||||||||||||| |||| | ||||||||||| | |||||| ||||||||||||| ||||| |
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| T |
11526723 |
cataatataaaatcattttgattaaccaacctaaatgattgttttta-----aaagcatatttgattgcaatagattcttaatttagtttgctgttattg |
11526629 |
T |
|
| Q |
561 |
aatgaca |
567 |
Q |
| |
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||||||| |
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| T |
11526628 |
aatgaca |
11526622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 333 - 424
Target Start/End: Complemental strand, 26122882 - 26122794
Alignment:
| Q |
333 |
aagataaagaacattattaacaaattgaacatagctacatattaactatttgtcgaaatgattagtaaattcatgaccacggttcatatctt |
424 |
Q |
| |
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||||||||||| ||||||| ||||||| ||||| ||||||||||| ||| | ||||| ||||||||||||||| |||| ||||| |||| |
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| T |
26122882 |
aagataaagaatattattagcaaattgtacatatctacatattaa---ttttccaaaatggttagtaaattcatgaacacgtttcatttctt |
26122794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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