View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10698_high_12 (Length: 302)

Name: NF10698_high_12
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10698_high_12
NF10698_high_12
[»] chr1 (1 HSPs)
chr1 (1-300)||(6698278-6698577)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 6698278 - 6698577
Alignment:
Q  1 gattcttcaacgatgttatgcccttagaagtgtctcttcaacatggtggataggtggagaaaatgtttcagcttttgcatttgcaccaacaccaacatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6698278 gattcttcaacgatgttatgcccttagaagtgtctcttcaacatggcggataggtggagaaaatgtttcagcttttgcatttgcaccaacaccaacatga 6698377  T
Q  101 ttacttggataacaagctttacaaagctcattatacctatttgcatcaaagttgtatgccttcataagacgctcttgtttagccatgaaacgacgatgga 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  6698378 ttacttggataacaagctttgcaaagctcattatacctatttgcatcaaagttgtatgtcttcataagacgctcttgtttagacatgaaacgacgatgga 6698477  T
Q  201 aatagccttgaaatgttggctcagttgaagtccttatgaagaataggtatgcaaaagcaaagtgcagggaagtaacaaagaaacatattggttccataac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6698478 aatagccttgaaatgttggctcagttgaagtccttatgaagaataggtatgcaaaagcaaagtgcagggaagtaacaaagaaacatactggttccataac 6698577  T

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