View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10698_high_13 (Length: 298)
Name: NF10698_high_13
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_high_13 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 27639437 - 27639140
Alignment:
| Q |
1 |
acaaccaccatattcaactacattcggtagtcaccttctgatcaagtacgatcaaaatattttataacatcattttgtgtctttgtttttaggtctagaa |
100 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27639437 |
acaaccaccatattcaactgcattcgatagtcaccttctgatcaagcacgatcaaaatattttataacatcattttgtgtctttgtttttaggtctagaa |
27639338 |
T |
|
| Q |
101 |
atgtgttaaaaacttactattgttgaatgacatggatataacatgagtcactatgaatacaataaattagtaatatttactattgatgtgttaaaaagta |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27639337 |
atgtgtcaaaaacttactattgttgaatgacatagatataacatgagtcactatgaatacaataaattagtaatatttactattgatgtgttaaaaagta |
27639238 |
T |
|
| Q |
201 |
caacatgagagagtaacatcgagagttggtttgtttctgggaaataacatatgtgagcataataataacattaacataggacaaaatctataactatg |
298 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27639237 |
caacattagagagtaacatcgagagttggtttgtttctggaaaataacatatgtgtgcataataataacattaacataggacaaaatctataactatg |
27639140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 151 - 298
Target Start/End: Complemental strand, 37368775 - 37368631
Alignment:
| Q |
151 |
ctatgaatacaataaattagtaatatttactattgatgtgttaaaaagtacaacatgagagagtaacatcgagagttggtttgtttctgggaaataacat |
250 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||| || |||||||||||| ||||| |||| ||| || |
|
|
| T |
37368775 |
ctataaatacaataaatta---atatttactattgatgtgttaaaaactacaacatgatagagtaatattgagagttggtttatttctaggaagtaaaat |
37368679 |
T |
|
| Q |
251 |
atgtgagcataataataacattaacataggacaaaatctataactatg |
298 |
Q |
| |
|
|| || ||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37368678 |
atatgtgcatagtaataacattaacttaggacaaaatctataactatg |
37368631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 55
Target Start/End: Complemental strand, 15394270 - 15394239
Alignment:
| Q |
24 |
tcggtagtcaccttctgatcaagtacgatcaa |
55 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
15394270 |
tcggtagtcaccttctgatcaagtacgatcaa |
15394239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University