View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10698_high_19 (Length: 257)

Name: NF10698_high_19
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10698_high_19
NF10698_high_19
[»] chr1 (3 HSPs)
chr1 (93-257)||(3144156-3144320)
chr1 (1-41)||(21444804-21444844)
chr1 (1-100)||(42267304-42267405)
[»] chr2 (4 HSPs)
chr2 (1-98)||(11689544-11689643)
chr2 (1-98)||(11721416-11721515)
chr2 (1-49)||(11689764-11689812)
chr2 (1-49)||(11721247-11721295)
[»] chr8 (2 HSPs)
chr8 (1-100)||(11291028-11291129)
chr8 (1-98)||(22890101-22890199)
[»] chr4 (4 HSPs)
chr4 (1-100)||(11857893-11857994)
chr4 (1-49)||(7280263-7280311)
chr4 (1-49)||(7280432-7280480)
chr4 (1-41)||(11858115-11858155)
[»] scaffold0181 (1 HSPs)
scaffold0181 (1-41)||(9429-9469)
[»] chr6 (2 HSPs)
chr6 (1-42)||(33648629-33648670)
chr6 (1-41)||(1215069-1215109)
[»] scaffold0100 (1 HSPs)
scaffold0100 (1-41)||(31082-31122)
[»] chr3 (2 HSPs)
chr3 (1-49)||(14633906-14633954)
chr3 (1-41)||(30380908-30380948)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 93 - 257
Target Start/End: Original strand, 3144156 - 3144320
Alignment:
Q  93 ataaaagcagtatacaatgtatatttgtagttgtatctatgtatgtattgatcgacaaaggcgtcagagggtgggaacgatcatgattaagttggcagag 192  Q
    |||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3144156 ataaaagcagtatagaatgtatatttgtagttgtatacatgtatgtattgatcgacaaaggcgtcagagggtgggaacgatcatgattaagttggcagag 3144255  T
Q  193 aaagtgtgtttggctcagaatagagaatagaaagaaagaaacagcagagaccacagagtacagac 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3144256 aaagtgtgtttggctcagaatagagaatagaaagaaagaaacagcagagaccacagagtacagac 3144320  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 21444804 - 21444844
Alignment:
Q  1 ttaagtgattaaattttgacatgacaaaatgccaggattaa 41  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  21444804 ttaagtgattaaattttgacacggcaaaatgccaggattaa 21444844  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 42267405 - 42267304
Alignment:
Q  1 ttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca-cgatcaa-ttttaaatgacctctagttttagggactaaacacgtataaaa 98  Q
    |||| ||||||||||||| || |||||| || |||||||||||| ||||  || ||| |||||||||||| ||| ||  ||||| ||||||| |||||||    
T  42267405 ttaaatgattaaattttggcaggacaaattgtcaggattaaagaatacagggaccaatttttaaatgacccctatttgcagggaataaacacatataaaa 42267306  T
Q  99 gc 100  Q
    ||    
T  42267305 gc 42267304  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 11689643 - 11689544
Alignment:
Q  1 ttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca-cgatcaa-ttttaaatgacctctagttttagggactaaacacgtataaaa 98  Q
    |||||||||||||||||| || ||||||||||| |||||||||| ||||  |||||| |||||||||||| ||| ||  | ||||||||||| |||||||    
T  11689643 ttaagtgattaaattttggcaggacaaaatgccgggattaaagaatacagggatcaatttttaaatgacccctatttccaaggactaaacacatataaaa 11689544  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 11721416 - 11721515
Alignment:
Q  1 ttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca-cgatcaa-ttttaaatgacctctagttttagggactaaacacgtataaaa 98  Q
    |||||||||||||||||| || || |||||| |||||||||||| ||||  |||||| |||||||||||| ||| ||  |  |||||||||| |||||||    
T  11721416 ttaagtgattaaattttggcaggataaaatgtcaggattaaagaatacagggatcaatttttaaatgacccctatttccaaagactaaacacatataaaa 11721515  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11689764 - 11689812
Alignment:
Q  1 ttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca 49  Q
    |||||||||||||||||| || |||||| ||| ||||||||||| ||||    
T  11689764 ttaagtgattaaattttggcaggacaaattgctaggattaaagaataca 11689812  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11721295 - 11721247
Alignment:
Q  1 ttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca 49  Q
    |||||||||||||||||| || | |||||||| ||||||||||| ||||    
T  11721295 ttaagtgattaaattttggcagggcaaaatgctaggattaaagaataca 11721247  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 11291129 - 11291028
Alignment:
Q  1 ttaagtgattaaattttgacatgacaaaatgccaggattaaagattacacgatcaa--ttttaaatgacctctagttttagggactaaacacgtataaaa 98  Q
    |||||||||||||||||| |||| ||||||  ||||||||| || |||| || | |  |||||||||||  ||| || |||| |||||||||||||||||    
T  11291129 ttaagtgattaaattttggcatggcaaaatatcaggattaaggaatacaagaaccattttttaaatgactcctatttgtaggaactaaacacgtataaaa 11291030  T
Q  99 gc 100  Q
    ||    
T  11291029 gc 11291028  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 22890199 - 22890101
Alignment:
Q  1 ttaagtgattaaattttgacatgacaaaatgccaggattaaagattacacgatca-attttaaatgacctctagttttagggactaaacacgtataaaa 98  Q
    ||||||||||||||||||||  ||||||||| || |||||| || |||| || ||  |||||||||||| ||| ||   |||||||||||| |||||||    
T  22890199 ttaagtgattaaattttgacgggacaaaatgtcatgattaaggaatacaagaccattttttaaatgacccctatttaccgggactaaacacatataaaa 22890101  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 11857994 - 11857893
Alignment:
Q  1 ttaagtgattaaattttgacatgacaaaatgccaggattaaagattacacgatcaa--ttttaaatgacctctagttttagggactaaacacgtataaaa 98  Q
    |||||||||||||||||| ||   ||||||||||||||||| || |||| |  | |  |||||||||||||||| ||  ||||||||||||| |||||||    
T  11857994 ttaagtgattaaattttggcagagcaaaatgccaggattaaggaatacagggaccattttttaaatgacctctatttgcagggactaaacacatataaaa 11857895  T
Q  99 gc 100  Q
    ||    
T  11857894 gc 11857893  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7280311 - 7280263
Alignment:
Q  1 ttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca 49  Q
    ||||||||||||||||||||| | ||||||| |||||||||||| ||||    
T  7280311 ttaagtgattaaattttgacagggcaaaatgacaggattaaagaataca 7280263  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7280432 - 7280480
Alignment:
Q  1 ttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca 49  Q
    ||||||||||||||||||||||| ||||||| ||| |||||||| ||||    
T  7280432 ttaagtgattaaattttgacatggcaaaatgtcagaattaaagaataca 7280480  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 11858115 - 11858155
Alignment:
Q  1 ttaagtgattaaattttgacatgacaaaatgccaggattaa 41  Q
    ||||||||||||||||||||| |  ||||||||||||||||    
T  11858115 ttaagtgattaaattttgacagggtaaaatgccaggattaa 11858155  T

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Target: scaffold0181 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 9429 - 9469
Alignment:
Q  1 ttaagtgattaaattttgacatgacaaaatgccaggattaa 41  Q
    ||||||||||||||||||||| |||||||| ||||||||||    
T  9429 ttaagtgattaaattttgacaggacaaaataccaggattaa 9469  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 33648670 - 33648629
Alignment:
Q  1 ttaagtgattaaattttgacatgacaaaatgccaggattaaa 42  Q
    ||||||||||||||||| |||||||||||| ||| |||||||    
T  33648670 ttaagtgattaaattttcacatgacaaaataccatgattaaa 33648629  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 1215109 - 1215069
Alignment:
Q  1 ttaagtgattaaattttgacatgacaaaatgccaggattaa 41  Q
    ||||||||||||||||||||| | ||||||| |||||||||    
T  1215109 ttaagtgattaaattttgacagggcaaaatgtcaggattaa 1215069  T

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Target: scaffold0100 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 31122 - 31082
Alignment:
Q  1 ttaagtgattaaattttgacatgacaaaatgccaggattaa 41  Q
    ||||||||||||||||||||| |||||| |||||| |||||    
T  31122 ttaagtgattaaattttgacaggacaaattgccagaattaa 31082  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14633954 - 14633906
Alignment:
Q  1 ttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca 49  Q
    ||||||||||||||||||  | ||||||||| |||||||||||| ||||    
T  14633954 ttaagtgattaaattttggtaggacaaaatgtcaggattaaagaataca 14633906  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30380948 - 30380908
Alignment:
Q  1 ttaagtgattaaattttgacatgacaaaatgccaggattaa 41  Q
    |||| |||||||||||||||||||||||||  |||||||||    
T  30380948 ttaaatgattaaattttgacatgacaaaatatcaggattaa 30380908  T

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