View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_high_2 (Length: 516)
Name: NF10698_high_2
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Complemental strand, 28418413 - 28417908
Alignment:
| Q |
1 |
tatttctaaaattaaactgaagttgtttatatttggatcaatatgttttaccttggtcataaatnnnnnnnttctaagcaaaacaaaagagataacttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28418413 |
tatttctaaaattaaactgaagttgtttatatttggatcaatatgttttaccttggtcataaataaaaaaattctaagcaaaacaaaagagataacttgt |
28418314 |
T |
|
| Q |
101 |
aaaagaagtcaagagcatgatacaaatcaacacactcttatttacagtttcatatnnnnnnngtaaatgtgtacaagagatcaagaacatgctactatcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
28418313 |
aaaagaagtcaagagcatgatacaaatcaacacactcttatttacagtttcatataaaaaaagtcaatgtgtacaagagatcaagaacatgctactatcc |
28418214 |
T |
|
| Q |
201 |
aaagcaacactctaaaagacaatgatattcttttgtttttcacagtcgttaaaacattcttcctaaacctcaccaacaatttatttatctttcagaatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28418213 |
aaagcaacactctaaaagacaatgatattcttttgtttttcacagtcgttaaaacattcttcctaaacctcaccaacaatttatttatctttcagaatct |
28418114 |
T |
|
| Q |
301 |
ttgaatcatatataaaagcttttgacagtggatgaaatggtagaaggatcagccatttctctc--attagtttgcatgtgttgaacaggtgggatgagag |
398 |
Q |
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||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
28418113 |
ttgaatc----ataaaagcttttgacagtggaggaaatggtagaaggatcagccatttctctcatattagtttgcatgtgttgaacaggtgggataagag |
28418018 |
T |
|
| Q |
399 |
taacaccaagctcttcaatgctcatggagttctgttctgtgaaagggtttctccacatacaaccatccattgatggtgcaacaaacatcggcttctcgta |
498 |
Q |
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| T |
28418017 |
taacaccaagctcttcaatgctcatgaagttctgttctgtgaaagggtttctccacatacaaccatccattgatggtgcaacgaacatcggcttctcgta |
28417918 |
T |
|
| Q |
499 |
gtcctatgct |
508 |
Q |
| |
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|||| ||||| |
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| T |
28417917 |
gtcccatgct |
28417908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 508
Target Start/End: Original strand, 28584798 - 28585326
Alignment:
| Q |
1 |
tatttctaaaattaaactgaagttgtttatatttggatcaatatgttttaccttggtcataaatnnnnnnn------ttctaagcaaaacaaaagagata |
94 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
28584798 |
tatttctaaaattaaactgaagttgtttatatttggaccaa-atgttttacctcggtcataaaaaatataaagaaaattctaagcaaaacaaaagagata |
28584896 |
T |
|
| Q |
95 |
acttgtaaaagaagtcaagagcatgatacaaatcaacacactcttatttacagtttcatatnnnnnnngta----------------aatgtgtacaaga |
178 |
Q |
| |
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||||||||||||||| ||||||||| |||||| ||||| |||| || ||||| |||||||| ||| ||||||||||||| |
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| T |
28584897 |
acttgtaaaagaagttaagagcatgctacaaagcaacaaactcatacttacattttcatatcaaaaaagtatacatgaacatattccaatgtgtacaaga |
28584996 |
T |
|
| Q |
179 |
gatcaa-gaacatgctactatccaaagcaacactctaaaagacaatgatattcttttgtttttcacagtc-gttaaaacattcttcctaaacctcaccaa |
276 |
Q |
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|||||| || ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28584997 |
gatcaaagagcatgctactatccaaagcaacactctagaagacaatgatattctcttgtttttcacagtccgttaaaacattcttcctaaacctcaccaa |
28585096 |
T |
|
| Q |
277 |
caatttatttatctttcagaatatttgaatcatatataaaagcttttgacagtggatgaaatggtagaaggatcagccatttctctcat--tagtttgca |
374 |
Q |
| |
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| T |
28585097 |
caatttatttatctttcaaaatctttgaatcata----aaagcttttgacggtcgaagaaatggtagaaggatcagccatttctctcatattagtttgca |
28585192 |
T |
|
| Q |
375 |
tgtgttgaacaggtgggatgagagtaacaccaagctcttcaatgctcatggagttctgttctgtgaaagggtttctccacatacaaccatccattgatgg |
474 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28585193 |
tgtgttgaacaggtgggataagagtaacaccaagctcttcaatgctcatgaagttctgttctgtgaaagggtttctccacatacaaccatccattgatgg |
28585292 |
T |
|
| Q |
475 |
tgcaacaaacatcggcttctcgtagtcctatgct |
508 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| |
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| T |
28585293 |
tgcaacaaacatcggcttctcgtagtcccatgct |
28585326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 166 - 508
Target Start/End: Complemental strand, 28404814 - 28404473
Alignment:
| Q |
166 |
aatgtgtacaagagatcaagaacatgc----tactatccaaagcaacactctaaaagacaatgatattcttttgtttttcacagtcgttaaaacattctt |
261 |
Q |
| |
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|||||||||| |||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||||| ||| | |||| ||| || |
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| T |
28404814 |
aatgtgtacatgagatcaagagcatgcatgctactgtccaaagcaacactctaggagacaatgatattcttttgttttgtacaatggttataac---ttt |
28404718 |
T |
|
| Q |
262 |
cctaaacctcaccaacaatttatttatctttcagaatatttgaatcatatataaaagcttttgacagtggatgaaatggtagaaggatcagccatttctc |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || ||||||||||||||||||||||||||| |
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| T |
28404717 |
cctaaacctcaccaacaatttatttatctttcagaatatttgaatc----ataaaagcttttgacggtcgaaaaaatggtagaaggatcagccatttctc |
28404622 |
T |
|
| Q |
362 |
tc--attagtttgcatgtgttgaacaggtgggatgagagtaacaccaagctcttcaatgctcatggagttctgttctgtgaaagggtttctccacataca |
459 |
Q |
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|| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28404621 |
tcatatttgttggcatgtgttgaacaggtgggatgagagtaacaccaagctcttcaatgctcatgaagttctgttctgtgaaagggtttctccacataca |
28404522 |
T |
|
| Q |
460 |
accatccattgatggtgcaacaaacatcggcttctcgtagtcctatgct |
508 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
28404521 |
accatccattgatggtgcaacgaacatcggcttctcgtagtcccatgct |
28404473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 312 - 508
Target Start/End: Original strand, 28580128 - 28580326
Alignment:
| Q |
312 |
ataaaagcttttgacagtggatgaaatggtagaaggatcagccatttctctcat--tagtttgcatgtgttgaacaggtgggatgagagtaacaccaagc |
409 |
Q |
| |
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|||||||||||||||| |||| ||||||||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |||| | ||||||||||||| |
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| T |
28580128 |
ataaaagcttttgacattggaggaaatggtagaaggatctgccatttctctcatattagttggcatgtgttcaacaggttggataacagtaacaccaagc |
28580227 |
T |
|
| Q |
410 |
tcttcaatgctcatggagttctgttctgtgaaagggtttctccacatacaaccatccattgatggtgcaacaaacatcggcttctcgtagtcctatgct |
508 |
Q |
| |
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| |||||| ||||| | | |||||||||||||| ||||||||||| | ||| |||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
28580228 |
ttttcaatcctcatcaattgttgttctgtgaaaggatttctccacatggcatcattcattgacggtgcaacaaacatcggcttctcgtagtcccatgct |
28580326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 28404922 - 28404870
Alignment:
| Q |
74 |
ctaagcaaaacaaaagagataacttgtaaaagaagtcaagagcatgatacaaa |
126 |
Q |
| |
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||||||||| |||||||||||||||||||||| |||||||| ||| |||||| |
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| T |
28404922 |
ctaagcaaaccaaaagagataacttgtaaaaggggtcaagagtatgctacaaa |
28404870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 502
Target Start/End: Original strand, 27834771 - 27834806
Alignment:
| Q |
467 |
attgatggtgcaacaaacatcggcttctcgtagtcc |
502 |
Q |
| |
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||||||||||||||||||| |||||||||||||||| |
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| T |
27834771 |
attgatggtgcaacaaacaccggcttctcgtagtcc |
27834806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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