View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_high_24 (Length: 250)
Name: NF10698_high_24
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 13706684 - 13706470
Alignment:
| Q |
15 |
cacagacacaattgataaccacttccaaaaaccaaataaaatatccatggcaactttattggtaataaacaaagacaacaccttaagggttactatatat |
114 |
Q |
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| T |
13706684 |
cacaaacacaattggtaaccacttccaaaaaccaaacaaaatatccatggcaactttattagtaataaacaaagacaacaccttaagggttactatatat |
13706585 |
T |
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| Q |
115 |
cttctccatgaggtcaatttcctgctttataggaattttaggaaaaaactccattccatttgatccaaacccatttttcattctatcatcatcatcattg |
214 |
Q |
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| T |
13706584 |
cttctccattaggtcaatttcctgctttataggaatttcaggaaaaaactccattccatttgatctaaacccacttgccattccatcatca---tcattg |
13706488 |
T |
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| Q |
215 |
aacatcaatggcacatag |
232 |
Q |
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| T |
13706487 |
aacatcattggcacatag |
13706470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 13644235 - 13644021
Alignment:
| Q |
15 |
cacagacacaattgataaccacttccaaaaaccaaataaaatatccatggcaactttattggtaataaacaaagacaacaccttaagggttactatatat |
114 |
Q |
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|||| ||||||||| ||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13644235 |
cacaaacacaattggtaaccactttcaaacaccaaacaaaatatccatggcaactttattggtaataaacaaagacaacaccttaagggtttctatatat |
13644136 |
T |
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| Q |
115 |
cttctccatgaggtcaatttcctgctttataggaattttaggaaaaaactccattccatttgatccaaacccatttttcattctatcatcatcatcattg |
214 |
Q |
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| T |
13644135 |
cttctccatgaggtcaatttcctgctttttaggaatttcaggaaaaaactccattccatttgatccaaacccacttgccattccatcatca---tcattg |
13644039 |
T |
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| Q |
215 |
aacatcaatggcacatag |
232 |
Q |
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| T |
13644038 |
aacatcattggcacatag |
13644021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 184
Target Start/End: Original strand, 17173578 - 17173666
Alignment:
| Q |
96 |
cttaagggttactatatatcttctccatgaggtcaatttcctgctttataggaattttaggaaaaaactccattccatttgatccaaac |
184 |
Q |
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|||||||||| ||| ||| |||||||||| |||||||| || || | ||||| | |||||||||||| ||||||| |||||||||| |
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| T |
17173578 |
cttaagggtttttattgatcatctccatgagatcaatttcttgattaagaggaacctcaggaaaaaactcaattccatatgatccaaac |
17173666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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