View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10698_high_25 (Length: 250)
Name: NF10698_high_25
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_high_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 51993042 - 51992799
Alignment:
| Q |
1 |
tttgttccaccttgctatcattccattgacatagagaaagaactcttcttgagtcatg----tatgtcttctactctgctgaagtttggattctaaaatg |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
51993042 |
tttgttccaccttgctatcattccattgacatagagaaagaactcttcttgagtcatgcatgtatgtcttctactctgctgaagtttgaattctaaaatg |
51992943 |
T |
|
| Q |
97 |
taaaatgttttgtttttcataatagtttccctcgttgattg---gtagatatgtttcatgttgaattttagatttattacattgtaagaagagatttatt |
193 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51992942 |
taaaatgttttgttttttataatagtttcccttgttgattgctggtagatatgtttcatgttgaattttagatttattacattgtaagaagagatttatt |
51992843 |
T |
|
| Q |
194 |
ttagaactgacatggtacttttcagggtagtacactgtacacct |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51992842 |
ttagaactgacatggtacttttcagggtagtacactgtacacct |
51992799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University