View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_high_31 (Length: 240)
Name: NF10698_high_31
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 14466890 - 14467093
Alignment:
| Q |
18 |
attaggctcatcaaatttgacctcatcaggaacttcattcaccatagtttcatcaccatcaactttttcaaaggtcactgctaagttaagatcaatagta |
117 |
Q |
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| T |
14466890 |
attaggctcattaaatttgacctcagcaggaacttcgttcaccatagtttcatcaccatcaactttttctaaggccactgctaagttaagatcaatagta |
14466989 |
T |
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| Q |
118 |
gtttcttttggagacacttctactgaaggagttttttcaaagttgacagatgctccactagtgctcccgctccccttatccaagtaccttacagcaacgt |
217 |
Q |
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| T |
14466990 |
gtttcttttggagacacttctactgaaggagttttttcaaagttgacagatgctccactagt------gctccccttatccaagtaccttacagcaacgt |
14467083 |
T |
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| Q |
218 |
aatcggattc |
227 |
Q |
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||||| |||| |
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| T |
14467084 |
aatcgaattc |
14467093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 25 - 227
Target Start/End: Original strand, 14458027 - 14458208
Alignment:
| Q |
25 |
tcatcaaatttgacctcatcaggaacttcattcaccatagtttcatcaccatcaactttttcaaaggtcactgctaagttaagatcaatagtagtttctt |
124 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14458027 |
tcatcaaatttgacctcagcaggaacttcattcaccatagtttcatcaccatcaactttttcaaaggtcactgctaagttaagatcaatagtagt----- |
14458121 |
T |
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| Q |
125 |
ttggagacacttctactgaaggagttttttcaaagttgacagatgctccactagtgctcccgctccccttatccaagtaccttacagcaacgtaatcgga |
224 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14458122 |
----------ttctactgaaggagttttttcaaagttggcagatgctccactagt------gctccccttatccaagtaccttacagcaacgtaatcgga |
14458205 |
T |
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