View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10698_high_34 (Length: 236)
Name: NF10698_high_34
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_high_34 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 34131017 - 34131221
Alignment:
| Q |
15 |
cataggcccaaagtacctgaatgatatcaccaacattgataatgtaagcatctggggtaggtttcacaagaacccattgttggtctgatttacgcttcac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34131017 |
cataggcccaaagtacctgaatgatatcaccaacattgataatgtaagcatctggggtaggtttcacaagaacccattgttggtctgatttacgcttcac |
34131116 |
T |
|
| Q |
115 |
ttcaagtcctccaacctcatcttgggcaagaatagttaaggcaccagcatccttgtgtcgtccaactccaagtgctaggtgagggtaagggcatggagga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34131117 |
ttcaagtcctccaacctcatcttgggcaagaatagttaaggcaccagcatccttgtgtcgtccaactccaagtgctaggtgagggtaagggcatggagga |
34131216 |
T |
|
| Q |
215 |
tagtg |
219 |
Q |
| |
|
||||| |
|
|
| T |
34131217 |
tagtg |
34131221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 34142524 - 34142713
Alignment:
| Q |
27 |
gtacctgaatgatatcaccaacattgataatgtaagcatctggggtaggtttcacaagaacccattgttggtctgatttacgcttcacttcaagtcctcc |
126 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| ||||||||||| || ||||||||||||||||| ||||| |||| ||| |||||||||||||||||||| |
|
|
| T |
34142524 |
gtacctgaatgacatcaccaacattaataatataagcatctggtgtgggtttcacaagaacccactgttgatctgttttccgcttcacttcaagtcctcc |
34142623 |
T |
|
| Q |
127 |
aacctcatcttgggcaagaatagttaaggcaccagcatccttgtgtcgtccaactccaagtgctaggtgagggtaagggcatggaggata |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||| | ||| | ||||| || |||||||||||||||||||||||||| |
|
|
| T |
34142624 |
aacctcatcttgggcaagaatagttaaggcaccagaatccttatgtggaccagcaccaagagcaaggtgagggtaagggcatggaggata |
34142713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 24 - 219
Target Start/End: Original strand, 34136717 - 34136912
Alignment:
| Q |
24 |
aaagtacctgaatgatatcaccaacattgataatgtaagcatctggggtaggtttcacaagaacccattgttggtctgatttacgcttcacttcaagtcc |
123 |
Q |
| |
|
|||||||||| || ||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| | ||| || ||| ||||||||||||| || |
|
|
| T |
34136717 |
aaagtacctggataatatcacaaacgttgataatgtaagcatctgaggtaggtttcacaagaacccactcttgtgatgctttgtgcttcacttcaagacc |
34136816 |
T |
|
| Q |
124 |
tccaacctcatcttgggcaagaatagttaaggcaccagcatccttgtgtcgtccaactccaagtgctaggtgagggtaagggcatggaggatagtg |
219 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||||||||||||||||||||||||||||| |
|
|
| T |
34136817 |
cccaacatcatcttgggcaagaatagttaaggcaccagcatccttgtgtcgcccaacgccgagagctaggtgagggtaagggcatggaggatagtg |
34136912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 24 - 218
Target Start/End: Original strand, 34139875 - 34140069
Alignment:
| Q |
24 |
aaagtacctgaatgatatcaccaacattgataatgtaagcatctggggtaggtttcacaagaacccattgttggtctgatttacgcttcacttcaagtcc |
123 |
Q |
| |
|
||||||||||||| ||| | |||| |||||||| || | |||| |||||||||| |||||||||| |||||| |||| |||||||||||||||||| || |
|
|
| T |
34139875 |
aaagtacctgaataataccgccaatgttgataatatacggatctcgggtaggttttacaagaacccgttgttgatctgttttacgcttcacttcaagacc |
34139974 |
T |
|
| Q |
124 |
tccaacctcatcttgggcaagaatagttaaggcaccagcatccttgtgtcgtccaactccaagtgctaggtgagggtaagggcatggaggatagt |
218 |
Q |
| |
|
| ||||||||| | ||| ||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34139975 |
ttcaacctcatttagggtaagaatagtcaaggcaccagcatccttgtgtcttccaaggccaagagctaggtgagggtaagggcatggaggatagt |
34140069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 221
Target Start/End: Original strand, 34125884 - 34126081
Alignment:
| Q |
24 |
aaagtacctgaatgatatcaccaacattgataatgtaagcatctggggtaggtttcacaagaacccattgttggtctgattt-acgcttcacttcaagtc |
122 |
Q |
| |
|
||||||||||| ||| ||||||||| ||||| ||| |||||| |||||| ||||||||||||||||||| ||| | |||| | ||||||||||||| | |
|
|
| T |
34125884 |
aaagtacctgagtgagatcaccaacgttgatgatgaaagcatttggggtgggtttcacaagaacccattcttg-tgaaatttgatgcttcacttcaagac |
34125982 |
T |
|
| Q |
123 |
ctccaacctcatcttgggcaagaatagttaaggcaccagcatccttgtgtcgtccaactccaagtgctaggtgagggtaagggcatggaggatagtgat |
221 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||||| | ||| |||| |||||||||||||||| |
|
|
| T |
34125983 |
cagcaacctcatcttgggcaagaatagttaaggcaccagcatccttgtgtcttcccatgccaagagctagctcaggagaaggacatggaggatagtgat |
34126081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 12387262 - 12387352
Alignment:
| Q |
131 |
tcatcttgggcaagaatagttaaggcaccagcatccttgtgtcgtccaactccaagtgctaggtgagggtaagggcatggaggatagtgat |
221 |
Q |
| |
|
|||||||| ||||| | ||| || |||| || ||||||||| || ||||| |||||||| | | |||| ||||||||||||||||||||| |
|
|
| T |
12387262 |
tcatcttgtgcaagcacagtcaaagcactagaatccttgtgacgaccaacaccaagtgccaaatcaggggaagggcatggaggatagtgat |
12387352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University