View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_high_5 (Length: 426)
Name: NF10698_high_5
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 6993343 - 6992927
Alignment:
| Q |
1 |
tattggagtctttcaatgcttctgggttcatgctcaatggttctattcctgagtggtttggtgagaagcttggtgcactaaaagagcttgatttaaggtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6993343 |
tattggagtctttcaatgcttctgggttcatgctcaatggttctattcctgagtggtttggtgagaagcttggtgcactaaaagagcttgatttaaggtc |
6993244 |
T |
|
| Q |
101 |
ttgttcaatatctggtgtgattcctggttcacttgggggcatgagaagtttgaagaagttgtttctttcaaggaacaatcttactagtagagtgccttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6993243 |
ttgttcaatatctggtgtgattcctggttcacttgggggcatgagaagtttgaagaagttgtttctttcaaggaacaatcttactagtagagtgccttca |
6993144 |
T |
|
| Q |
201 |
ggtttggggttgttatctaatctttctattctcgatctctctaggaatttgctttcaggatcagtacctgaatctttctctaagctcggtaacattacaa |
300 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6993143 |
ggtttggggttgttatctaatctttctattcttgatctctctaggaatttgctttcaggatcagtacctgaatctttctctaagctcggtaacattacaa |
6993044 |
T |
|
| Q |
301 |
ggcttgatctttctaataattatttatctggctctattccacctgaactaggtaccctttcaaatcttcaaaatttgaacctttctaacaattctttcac |
400 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6993043 |
ggcttgatctttcaaataattatttatctggctctattccacctgaactaggtaccctttcaaatcttcaaaatttgaacctttctaacaattctttcac |
6992944 |
T |
|
| Q |
401 |
ttcttcgcttccctctc |
417 |
Q |
| |
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||||||||||||||||| |
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| T |
6992943 |
ttcttcgcttccctctc |
6992927 |
T |
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