View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_low_10 (Length: 411)
Name: NF10698_low_10
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 14 - 399
Target Start/End: Complemental strand, 48677413 - 48677028
Alignment:
| Q |
14 |
agagcatgtagatatgaaactacaaaaaccatatggcacttgatatagtgctgtatgctgtttatataaacgtcttcacatgcaacgnnnnnnnnnnnnn |
113 |
Q |
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| T |
48677413 |
agagcatgtagatatgaaactacaaaaaccatatggcacttgatatagtgctgtatgctgtttatataaacgtcttcacatgcaacgaaaaacaaaagaa |
48677314 |
T |
|
| Q |
114 |
nnntagtttaaatcatatattgaagctgaaaagtgaacatgatcaatatattatagttacagcaacaataacttgacatccatctagaatatattttgaa |
213 |
Q |
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| T |
48677313 |
aaatagtttaaatcatatattgaagctgaaaagtgaacatgatcaatatattatagttacagcaacaatagcttgacatccatctagaatatattttgaa |
48677214 |
T |
|
| Q |
214 |
agaaatctcacaatttggagagagtagacaaattttgaaagttgacattgagtgcttgctggagctgattgtgattgagattcctacattctcaaaatga |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48677213 |
agaaatctcacaatttggagagagtagacaaattttgaaagttgacattgagtgcttgctggagctgattgtgattgagattcctacattctcaaaatga |
48677114 |
T |
|
| Q |
314 |
tgaggaaattaaaatgtttgataggaagaagtagaaaaagtttgcaagaagataattaattacatacaggtctgtgagagaggtga |
399 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48677113 |
tgaggaaattaaaatgtttgataggaagaattagaaaaagtttgcaagaagataattaattacatacaggtctgtgagagaggtga |
48677028 |
T |
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