View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_low_11 (Length: 392)
Name: NF10698_low_11
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 103 - 390
Target Start/End: Original strand, 55179741 - 55180027
Alignment:
| Q |
103 |
tataattgtaaagtaaaaagttgagnnnnnnngtacaatatatagactttgttggagtgtcaaatgctgctgaaaaatataattagaaatacaatctttt |
202 |
Q |
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| T |
55179741 |
tatacttgtaaagtaaaaagttgagaaaaaa-gtacaatatatagacttttttggagtgtcaaatgctgctgaaaaatataattagaaatacaatctttt |
55179839 |
T |
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| Q |
203 |
ttgtgaatgcaaataaaaatatatttattactgaaattgaatattttttattacaatgaaagtgagagnnnnnnnngcacgtacagatgctaatgcgtgt |
302 |
Q |
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| T |
55179840 |
ttgtgaatgcaaataaaaatatatttattactgaaattgaatattttttattacaatgaaagtgagagaaaaaaaagcacgtacagatgctaatgcgtgt |
55179939 |
T |
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| Q |
303 |
tttctatttaggatcaattattgtgacaataaatcattagcatgcaattgcaattcaatatgcaggagcatgcagtaatgctcctttg |
390 |
Q |
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| T |
55179940 |
tttctatttaggatcaattattgtgacaataaatcattagcatgcaattgcaattcaatatgcaggagcatgcagtaatgctcctttg |
55180027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 55179612 - 55179707
Alignment:
| Q |
12 |
aagaacctcaacatccccactagctccttggttaataacctcaattccaacacataagcttaggctaaaagaagcgaaaacaaagataacatataa |
107 |
Q |
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| T |
55179612 |
aagaacctcaacatccccactagctccttggttaataacctcaattccaacacataagcttaggctaaaagaagcgaaaacaaagataacatataa |
55179707 |
T |
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