View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_low_12 (Length: 371)
Name: NF10698_low_12
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 41818389 - 41818640
Alignment:
| Q |
17 |
agtcaggaccattgattctaactataaaagtggataataattttatcatgtatgaggaaaattaatctactactcacagcaggtttctcaagaatataga |
116 |
Q |
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| T |
41818389 |
agtcaggaccattgattctaactataaaagtggataataattttatcatgtatgaggaaaattaatctactactcacagcaggtttctcaagaatataga |
41818488 |
T |
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| Q |
117 |
tgatgccaaatgagccacctaagtatggtacctgccatagtggattaaactcaataactttcattatggaaatgtaggttatgaaattttcagcaagcca |
216 |
Q |
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| T |
41818489 |
tgatgccaaatgagccacctaagtatggtacctgccatagtggattaaactcaataactttcattatggaaatgtaggttatgaaattttcagcaagcca |
41818588 |
T |
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| Q |
217 |
tataaacatgtaaatttgtataaggtcattgtaacagtacatggtgcatagt |
268 |
Q |
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| T |
41818589 |
tataaacatgtaaatttgtataaggtcattgtaacagtacatggtgcatagt |
41818640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 75 - 264
Target Start/End: Original strand, 41824963 - 41825152
Alignment:
| Q |
75 |
aaattaatctactactcacagcaggtttctcaagaatatagatgatgccaaatgagccacctaagtatggtacctgccatagtggattaaactcaataac |
174 |
Q |
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| T |
41824963 |
aaattaatctactactcacagctggtttcacaaggacatagataatgccaaatgaggcacttaaatatggtacctgcattggtgaatgaaactcaattac |
41825062 |
T |
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| Q |
175 |
tttcattatggaaatgtaggttatgaaattttcagcaagccatataaacatgtaaatttgtataaggtcattgtaacagtacatggtgca |
264 |
Q |
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| T |
41825063 |
tatcagcaagaaaatgaagattatgaaattttcagcaaaccctataagcatgtaaatttgaataggcatattgtaacagtacatgatgca |
41825152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 41825278 - 41825330
Alignment:
| Q |
317 |
cttgatatagaaagttatcaattttactcacccaaggtgcctatgctactcca |
369 |
Q |
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| T |
41825278 |
cttgatatagaaagttattaattttactcacccaaggtgcccatgctaatcca |
41825330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 41818689 - 41818740
Alignment:
| Q |
317 |
cttgatatagaaagttatcaattttactcacccaaggtgcctatgctactcca |
369 |
Q |
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| T |
41818689 |
cttgatatagaaagtca-caattttactcacccaaggtgcccatgctaatcca |
41818740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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