View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_low_13 (Length: 368)
Name: NF10698_low_13
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 364
Target Start/End: Original strand, 38909866 - 38910213
Alignment:
| Q |
17 |
attgatgtgttttgaatttgattaacttgaataagattacatcgtaatttatgtcaagaaaataaccagccaaattgaaggctaagaaacactgtaaatc |
116 |
Q |
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| T |
38909866 |
attgatgtgttttgaatttgattaacttgaataagattacatcgtaatttatgtcaagaaaataaccagccaaattgaaggctaagaaacactgtaaatc |
38909965 |
T |
|
| Q |
117 |
agtaattttttaaaaatcaaacattagttccttaaactaaatggattaattaatgacaagaaaaaacgaaatcatagccataaagctccagcttgtttaa |
216 |
Q |
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| T |
38909966 |
agtaatttttttaaaatcaaacattagttccttaaactaaatggattaattaatgacaagaaacaacgaaatcatagccataaagctccagcttgtttaa |
38910065 |
T |
|
| Q |
217 |
gcaatggaaccaattcaccagaaatatgagtagccatgagacgatccaatccaccaaacaacttaccacctataaacaccattggaaactgcacatttcc |
316 |
Q |
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| T |
38910066 |
gcaatggaaccaattcaccagaaatatgagtagccatgagacgatccaatccaccaaacaacttaccacctataaacaccattggaaactgcacatttcc |
38910165 |
T |
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| Q |
317 |
ttcaattattgattccaattctcttgcaacaatcacttcatctctctc |
364 |
Q |
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| T |
38910166 |
ttcaattattgattccaattctcttgcaacaatcacttcatctttctc |
38910213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 192 - 295
Target Start/End: Original strand, 30540535 - 30540638
Alignment:
| Q |
192 |
agccataaagctccagcttgtttaagcaatggaaccaattcaccagaaatatgagtagccatgagacgatccaatccaccaaacaacttaccacctataa |
291 |
Q |
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|||||||||||||| ||||||||||| | || ||||||||||||||||||||||| ||||| | ||||||| ||| |||||||| || |||||||||| |
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| T |
30540535 |
agccataaagctcctgcttgtttaagaatggggaccaattcaccagaaatatgagtggccataattcgatccagtcctccaaacaaatttccacctataa |
30540634 |
T |
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| Q |
292 |
acac |
295 |
Q |
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|||| |
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| T |
30540635 |
acac |
30540638 |
T |
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