View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_low_14 (Length: 362)
Name: NF10698_low_14
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 52698831 - 52698485
Alignment:
| Q |
1 |
ataacgatagatataatcgtagttattgtgggtaatgcaaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaaggg |
100 |
Q |
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| T |
52698831 |
ataacgatagatataatcgtagttattgtgggtaatgcaaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaaggg |
52698732 |
T |
|
| Q |
101 |
cacccatgttgatggcaaagtaaaaccaattaaagaaagagaatttcatttggacttctttttcatctccctcgtcaaattgatcagctccaaatgagga |
200 |
Q |
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| T |
52698731 |
cacccatgttgatggcaaagtaaaaccaattaaagaaagagaatttcatttggacttctttttcatctccctcgtcaaattgatcagctccaaatgagga |
52698632 |
T |
|
| Q |
201 |
aacacaaggtttgattcctccagtacccaaggcaatgaggccaagtgcactatacaagaataagttttggccttggcttgcttctttgcacggtgtcact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52698631 |
aacacaaggtttgattcctccagtacccaaggcaatgaggccaagtgcactatacaagaataagttttggccttggcttgcttctttgcacggtgtcact |
52698532 |
T |
|
| Q |
301 |
ttcacagcgcattttggcgggtgcaatgtggcaaaggaggccgaaat |
347 |
Q |
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| T |
52698531 |
ttcacagcacattttggcgggtgcaatgtggaaaaggaggccgaaat |
52698485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 3 - 294
Target Start/End: Complemental strand, 52712648 - 52712357
Alignment:
| Q |
3 |
aacgatagatataatcgtagttattgtgggtaatgcaaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggca |
102 |
Q |
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||||||||||| || ||||||||||||||| | | |||||||||||| |||||||| || | |||| ||||||||||| || ||||||||||| ||| |
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| T |
52712648 |
aacgatagataaaaccgtagttattgtgggaattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagca |
52712549 |
T |
|
| Q |
103 |
cccatgttgatggcaaagtaaaaccaattaaagaaagagaatttcatttggacttctttttcatctccctcgtcaaattgatcagctccaaatgaggaaa |
202 |
Q |
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||||||||||| |||||| |||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||| || |||||||| || || | |
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| T |
52712548 |
cccatgttgatagcaaagaaaaaccaattaaagaaagcgtatttcttttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgata |
52712449 |
T |
|
| Q |
203 |
cacaaggtttgattcctccagtacccaaggcaatgaggccaagtgcactatacaagaataagttttggccttggcttgcttctttgcacggt |
294 |
Q |
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||||||||||||||||||| ||||| ||||||||||| |||||||||| ||||||||| || |||| |||| |||||||| | ||||||| |
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| T |
52712448 |
cacaaggtttgattcctccggtacctaaggcaatgagaccaagtgcaccgtacaagaatgagatttgagcttgacttgcttcctggcacggt |
52712357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 3 - 290
Target Start/End: Complemental strand, 52721469 - 52721182
Alignment:
| Q |
3 |
aacgatagatataatcgtagttattgtgggtaatgcaaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggca |
102 |
Q |
| |
|
||||||||||| || | ||||||||||||||| | |||||||||||| |||||||| || | |||| ||||||||||| || ||||||||||| | | |
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| T |
52721469 |
aacgatagataaaaccatagttattgtgggtattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagaa |
52721370 |
T |
|
| Q |
103 |
cccatgttgatggcaaagtaaaaccaattaaagaaagagaatttcatttggacttctttttcatctccctcgtcaaattgatcagctccaaatgaggaaa |
202 |
Q |
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||||||||||| |||||| |||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| || |||||||| || || | |
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| T |
52721369 |
cccatgttgatagcaaagaaaaaccaattaaagaaagcgtatttctgttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgata |
52721270 |
T |
|
| Q |
203 |
cacaaggtttgattcctccagtacccaaggcaatgaggccaagtgcactatacaagaataagttttggccttggcttgcttctttgca |
290 |
Q |
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||||||| ||||||||||| |||||||| ||||| ||||||||||||| |||||||| || |||||||||| ||||| || ||||| |
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| T |
52721269 |
cacaaggcttgattcctcctgtacccaaagcaataaggccaagtgcaccgtacaagaaggagatttggccttgacttgcctccttgca |
52721182 |
T |
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