View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10698_low_17 (Length: 340)

Name: NF10698_low_17
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10698_low_17
NF10698_low_17
[»] chr4 (5 HSPs)
chr4 (1-335)||(22213855-22214189)
chr4 (179-248)||(20321704-20321773)
chr4 (181-245)||(17219342-17219406)
chr4 (180-310)||(22049907-22050038)
chr4 (182-252)||(19100071-19100141)
[»] chr1 (2 HSPs)
chr1 (181-252)||(31917027-31917098)
chr1 (163-254)||(24216416-24216507)
[»] chr6 (2 HSPs)
chr6 (182-244)||(18736672-18736734)
chr6 (71-111)||(21908666-21908706)
[»] chr2 (2 HSPs)
chr2 (182-250)||(19898416-19898484)
chr2 (182-252)||(33851550-33851620)
[»] chr7 (1 HSPs)
chr7 (71-123)||(13905074-13905124)


Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 22214189 - 22213855
Alignment:
Q  1 atcaattgaatgagattaaagaacacattgattaatgaaatttaacattgattccgattctataattaagtggcttcttgaaacttctaagtactaaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22214189 atcaattgaatgagattaaagaacacattgattaatgaaatttaacattgattccgattctataattaagtggcttcttgaaacttctaagtactaaaaa 22214090  T
Q  101 ctatttaattgttaacaaagcatgcaannnnnnnacttataaagcgaatagaaatagtctatttattacatgaaacataagaaaaatatggctcaaattc 200  Q
    ||||||||||||||||||||||||||        |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  22214089 ctatttaattgttaacaaagcatgcattttttttacttataaagcgaacataaatagtctatttattacatgaaacataagaaaaatatggctcaaactc 22213990  T
Q  201 tcatatctgtttttgctttgatcttaattctttctccatttcttgttgtaaccgatcggggtatgtcgttttacacaccattttcaagttttctaattat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22213989 tcatatctgtttttgctttgatcttaattctttctccatttcttgttgtaaccgatcggggtatgtcgttttacacaccattttcaagttttctaattat 22213890  T
Q  301 cttatacacagattagattttttataatattcatt 335  Q
    |||||||||| ||||||||||||||||||||||||    
T  22213889 cttatacacatattagattttttataatattcatt 22213855  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 248
Target Start/End: Original strand, 20321704 - 20321773
Alignment:
Q  179 aagaaaaatatggctcaaattctcatatctgtttttgctttgatcttaattctttctccatttcttgttg 248  Q
    |||||||| |||| |||||||||||||| ||||||||||||||||    ||||||||||| |||||||||    
T  20321704 aagaaaaacatgggtcaaattctcatatttgtttttgctttgatcaattttctttctccaattcttgttg 20321773  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 17219342 - 17219406
Alignment:
Q  181 gaaaaatatggctcaaattctcatatctgtttttgctttgatcttaattctttctccatttcttg 245  Q
    |||||||||||||||||||||| | | ||||| |||||||||| |  || |||||||||||||||    
T  17219342 gaaaaatatggctcaaattctcttttatgtttatgctttgatcattcttttttctccatttcttg 17219406  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 310
Target Start/End: Complemental strand, 22050038 - 22049907
Alignment:
Q  180 agaaaaatatggctcaaattctcatatctgtttttgctttgatcttaattctttctccatttcttgttgtaaccgatcggggtatgtcgttttacacacc 279  Q
    ||||||||||||||||||||||||| | | ||| || ||||||| |  |||||||   |||| || |||||||| || | ||||||||  ||| ||||||    
T  22050038 agaaaaatatggctcaaattctcatgtttatttatgatttgatcatctttctttccatatttattattgtaaccaatggtggtatgtctcttttcacacc 22049939  T
Q  280 attttcaagttttctaa-ttatcttatacaca 310  Q
    |  ||| | |||||||| ||||||||||||||    
T  22049938 acattccaattttctaatttatcttatacaca 22049907  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 252
Target Start/End: Original strand, 19100071 - 19100141
Alignment:
Q  182 aaaaatatggctcaaattctcatatctgtttttgctttgatcttaattctttctccatttcttgttgtaac 252  Q
    |||||||||||| ||||| |||| | ||||| |||||||||| |  ||||||||| |||||||||| ||||    
T  19100071 aaaaatatggctaaaattttcatctttgtttatgctttgatcatttttctttctcaatttcttgttataac 19100141  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 31917027 - 31917098
Alignment:
Q  181 gaaaaatatggctcaaattctcatatctgtttttgctttgatcttaattctttctccatttcttgttgtaac 252  Q
    ||||||||||  |||||||||||||| ||||| |||||||||| |  || |||||| |||||||||||||||    
T  31917027 gaaaaatatgattcaaattctcatatttgtttatgctttgatcatctttatttctctatttcttgttgtaac 31917098  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 254
Target Start/End: Original strand, 24216416 - 24216507
Alignment:
Q  163 ttattacatgaaacataagaaaaatatggctcaaattctcatatctgtttttgctttgatcttaattctttctccatttcttgttgtaaccg 254  Q
    ||||||||||||| | | ||| |||||||||||||||  || |||| ||| |||||| ||  || ||||||||| | |||||||||||||||    
T  24216416 ttattacatgaaaaagaggaataatatggctcaaatttccaaatctttttatgctttaattatatttctttctctaattcttgttgtaaccg 24216507  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 18736672 - 18736734
Alignment:
Q  182 aaaaatatggctcaaattctcatatctgtttttgctttgatcttaattctttctccatttctt 244  Q
    ||||||||||||||| ||||||||| ||||| |||||||||| |  |||||| ||||||||||    
T  18736672 aaaaatatggctcaatttctcatatttgtttatgctttgatcatctttctttttccatttctt 18736734  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 21908666 - 21908706
Alignment:
Q  71 tggcttcttgaaacttctaagtactaaaaactatttaattg 111  Q
    ||||||||||||||| |||| | ||||||||||||||||||    
T  21908666 tggcttcttgaaactcctaaatgctaaaaactatttaattg 21908706  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 19898484 - 19898416
Alignment:
Q  182 aaaaatatggctcaaattctcatatctgtttttgctttgatcttaattctttctccatttcttgttgta 250  Q
    ||||||||||||||||||||| | | ||||| |||||||||| |  || ||||||||| ||||||||||    
T  19898484 aaaaatatggctcaaattctcttttatgtttatgctttgatcatccttttttctccatctcttgttgta 19898416  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 252
Target Start/End: Original strand, 33851550 - 33851620
Alignment:
Q  182 aaaaatatggctcaaattctcatatctgtttttgctttgatcttaattctttctccatttcttgttgtaac 252  Q
    ||||||||||||||||||||||| |   ||| || ||||||| |  ||||||||| |||||||||||||||    
T  33851550 aaaaatatggctcaaattctcatgttcatttatgttttgatcatctttctttctctatttcttgttgtaac 33851620  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 13905124 - 13905074
Alignment:
Q  71 tggcttcttgaaacttctaagtactaaaaactatttaattgttaacaaagcat 123  Q
    |||||||||| ||||||||| | |||||||||||||||  |||||||||||||    
T  13905124 tggcttcttgcaacttctaaatgctaaaaactatttaa--gttaacaaagcat 13905074  T

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