View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10698_low_18 (Length: 334)

Name: NF10698_low_18

Description: NF10698

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10698_low_18

[»] chr4 (1 HSPs)

Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 180; E-Value: 4e-97

Query Start/End: Original strand, 29 - 334

Target Start/End: Original strand, 12855171 - 12855474

Alignment:

Q	29	gtcacatatttctcaattagtaattaccaagaaaaaggatatcactctttnnnnnnnnntgatatcacaccagtgnnnnnnnnatactaatagtgttacg	128	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	12855171	gtcacatatttctcaattagtaattaccaagaaaaaggatatcactctttaaaaaaaaatgatatcacaccagt-ttttttttatactaatagtgttacg	12855269	T

Q	129	gatcattagttaaagaaaccaaaaagaaattttttacatnnnnnnnnncacttttatactttttagggtttgactacaaatcttttaaaataattttacc	228	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|
T	12855270	gatcattagttaaagaaaccaaaaagaaattttttacataaaaaaaa-cacttttatactttttagggtttgactacaaatcttttaaaataattttaac	12855368	T

Q	229	atannnnnnnnncttaatcaatgttctaaatacactaattagcattctcttttttcttgatattatgttttggaaattcaaaatcttagtaaatggttca	328	Q
		\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	12855369	atatttttttttcttaatcaatgttctaaatacactaattagcattcttttttttcttgatattatgttttggaaattcaaaatcttagtaaatggttca	12855468	T

Q	329	aaaacc	334	Q
		\|\|\|\|\|\|
T	12855469	aaaacc	12855474	T

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