View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_low_19 (Length: 325)
Name: NF10698_low_19
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 49179906 - 49179592
Alignment:
| Q |
1 |
tattcaataaaataaataatacatccatccagtaatgaaacataaattgcaaagttcttccaccataatggcagttagccgtcaaattagatcatattaa |
100 |
Q |
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| T |
49179906 |
tattcaataaaataa-taatacatccatccaataatgaaacataaattgcaaagttcttccaccataatggcagttaaccgtcaaattagatcatattaa |
49179808 |
T |
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| Q |
101 |
aaggcttctttcgatttcatttgtatgtagagacaatcctatgtccttcaactaactgaaagcttacatttgcgagaaatccttggaaacgaggataact |
200 |
Q |
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| T |
49179807 |
aaggcttctttccatttcatttgtatgcagagacaatcctatgtccttcaactaactgaaagcttacatttgcgagaaatccttggaaacgaggataact |
49179708 |
T |
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| Q |
201 |
cttcttttaaaatacgccgatttggctttggatttgactaatggctaatgttgattttcatgacccctaaaacccgctcattcagtagaatatattttgt |
300 |
Q |
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| T |
49179707 |
cttcttttaaaatacgccgatttggctttggatttgatgaatggctaatgttgattttcatgacccctaaaagccgcgcattcagtagaatatattttgt |
49179608 |
T |
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| Q |
301 |
aaatcgaagttcatct |
316 |
Q |
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| T |
49179607 |
aaatcgaagttcatct |
49179592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 49170263 - 49170424
Alignment:
| Q |
42 |
ataaattgcaaagttcttccaccataatggcagttagccgtcaaattagatcatattaaaaggcttctttcgatttcatttgtatgtagagacaatccta |
141 |
Q |
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| T |
49170263 |
ataaaatgcaaagttcttccaccataatggctgttcgctgtcaaattagatcatattaagaaccttctttcccgttcatttgtatgtagagacaatccta |
49170362 |
T |
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| Q |
142 |
tgtccttcaactaactgaaagcttacatttgcgagaaatccttggaaacgaggataactctt |
203 |
Q |
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| T |
49170363 |
tgtccttcaaccaattgaaagtttacattcggaagaaatccttggacacgagtataattctt |
49170424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 49170477 - 49170534
Alignment:
| Q |
259 |
catgacccctaaaacccgctcattcagtagaatatattttgtaaatcgaagttcatct |
316 |
Q |
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| T |
49170477 |
catgacccctaaaagccgcgcattctgcaaaatatattttgcaaattgaagttcatct |
49170534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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