View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_low_2 (Length: 594)
Name: NF10698_low_2
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 15 - 581
Target Start/End: Original strand, 47028840 - 47029406
Alignment:
| Q |
15 |
agaaaacacatgcatggaagggtagagagtgaatcccacttggccggagaaaatttcctcgagtagacaaagaagaagccagcacaaaggaaacgacagt |
114 |
Q |
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| T |
47028840 |
agaaaacacatgcatggaagggtagagagtgaatcccacttggccggagaaaatttcctcgagtagacaaagaagaagccagcacaaaggaaacgacagt |
47028939 |
T |
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| Q |
115 |
cggagaaaaatacacggtatacaaagaacagaagcattcaaaacacttagtgcatacaagaaatatttcaaagtcggatacatacacagtggccaccaaa |
214 |
Q |
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| T |
47028940 |
ccgagaaaaatacacagtatacaaagaacagaagcattcaaaacacttagtgcatacaagaaatatttcaaagtcggatacatacacagtggccaccaaa |
47029039 |
T |
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| Q |
215 |
agacacgaggcaccgagcccttgttcaaaacaaattacatctagacaatctcccattcgttaaactccttgcagcaatcaagctcgtccagcttcaaaac |
314 |
Q |
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| T |
47029040 |
agacacgaggcaccgagcccttgttcaaaacaaattacatctagacaatctcccattcgttaaactccttgcagcaatcaagctcgtccagcttcaaaac |
47029139 |
T |
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| Q |
315 |
cacgccaggattgaattgttggatctgggcaatggcgttattaaatgagtccagacgtactttgcaaacttggtccaccaaaccgtccctctcaacttta |
414 |
Q |
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| T |
47029140 |
cacgccaggattgaattgttggatctgggcaatggcgttattaaaggagtccagacgtactttgcaaacttggtccaccaaaccgtccctctcaacttta |
47029239 |
T |
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| Q |
415 |
aagcagcaaactcctctctttcttcacggcctccagatcctcctcggataggattgacttctccattaatgaagtaactcttttgtggccagccttagct |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47029240 |
aagcagcaaactcctctctttcttcacggcctccagatcctcctcagataggattgacttctccattaatgaagtaactcttttgtggccagccttagct |
47029339 |
T |
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| Q |
515 |
cttccaccttagcacccttttcgactaacataaccttcaaccttctttctagagccgtaatagtcct |
581 |
Q |
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| T |
47029340 |
cttcctccttagcacccttttcgactaacataaccttcaaccttctttctagggccgtaatagtcct |
47029406 |
T |
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