View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10698_low_21 (Length: 309)

Name: NF10698_low_21
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10698_low_21
NF10698_low_21
[»] chr2 (4 HSPs)
chr2 (1-296)||(7390418-7390716)
chr2 (1-296)||(19586396-19586694)
chr2 (91-127)||(7390385-7390421)
chr2 (91-127)||(19586691-19586727)
[»] chr4 (5 HSPs)
chr4 (78-296)||(11658129-11658348)
chr4 (102-299)||(50234379-50234577)
chr4 (47-162)||(11658354-11658471)
chr4 (1-90)||(11658459-11658548)
chr4 (91-127)||(11658545-11658581)
[»] scaffold1463 (1 HSPs)
scaffold1463 (102-299)||(38-236)
[»] chr3 (1 HSPs)
chr3 (1-95)||(51655556-51655650)
[»] chr1 (3 HSPs)
chr1 (223-298)||(42837142-42837218)
chr1 (154-201)||(35598655-35598702)
chr1 (154-205)||(42837236-42837287)
[»] scaffold0368 (1 HSPs)
scaffold0368 (154-201)||(13519-13566)


Alignment Details
Target: chr2 (Bit Score: 161; Significance: 7e-86; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 7390418 - 7390716
Alignment:
Q  1 tagggtttgaattatagctttttcattgattttgtgtaaattatcattgattataaattacattatagtcaaaatggtt-gattatcaattttgtgtgaa 99  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||| ||||||||||||||||| ||    
T  7390418 tagggtttgaattatag-tttttcattgattttgtgtaaattatcattgattatcaattacagtatagccaaaatggtttgattatcaattttgtgtaaa 7390516  T
Q  100 tgttgctaatttcgaatttgacattagg-tgtgaattttgtgtaaattataattaattttgatatgtgattgtgcgaattacagttttttcttcattgtt 198  Q
    | |||||||||| ||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||| ||||||||| |||||||||||||||    
T  7390517 ttttgctaattttgaatttgacattagggtgtgaattttgtgtaaattatagttgattttgatatgtgattgtgtgaattacagctttttcttcattgtt 7390616  T
Q  199 agagtag--annnnnnnnnnnnnnnnattgttagtttttgtaatcgttactttctctgtgttccagtctcaattcaatatcttgcaatcatgctacttct 296  Q
    ||| |||                   |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  7390617 agaatagttttttttttctttttttcattgttagtttttgtaatcgttactttctctgtgtttcagtctcaattcaataccttgcaatcatgctacttct 7390716  T

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Target: chr2; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 19586694 - 19586396
Alignment:
Q  1 tagggtttgaattatagctttttcattgattttgtgtaaattatcattgattataaattacattatagtcaaaatggtt-gattatcaattttgtgtgaa 99  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||| ||||||||||||||||| ||    
T  19586694 tagggtttgaattatag-tttttcattgattttgtgtaaattatcattgattatcaattacagtatagccaaaatggtttgattatcaattttgtgtaaa 19586596  T
Q  100 tgttgctaatttcgaatttgacattagg-tgtgaattttgtgtaaattataattaattttgatatgtgattgtgcgaattacagttttttcttcattgtt 198  Q
    | |||||||||| ||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||| ||||||||  |||||||||||||||    
T  19586595 ttttgctaattttgaatttgacattagggtgtgaattttgtgtaaattatagttgattttgatatgtgattgtgtgaattacaactttttcttcattgtt 19586496  T
Q  199 agagtag--annnnnnnnnnnnnnnnattgttagtttttgtaatcgttactttctctgtgttccagtctcaattcaatatcttgcaatcatgctacttct 296  Q
    ||| |||                   ||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  19586495 agaatagttttttttttctttttttcattgttagtttctgtaatcgttactttctctgtgtttcagtctcaattcaataccttgcaatcatgctacttct 19586396  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 7390385 - 7390421
Alignment:
Q  91 ttgtgtgaatgttgctaatttcgaatttgacattagg 127  Q
    |||||||||| |||||||||| |||||||||||||||    
T  7390385 ttgtgtgaattttgctaattttgaatttgacattagg 7390421  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 19586727 - 19586691
Alignment:
Q  91 ttgtgtgaatgttgctaatttcgaatttgacattagg 127  Q
    |||||||||| |||||||||| |||||||||||||||    
T  19586727 ttgtgtgaattttgctaattttgaatttgacattagg 19586691  T

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Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 78 - 296
Target Start/End: Complemental strand, 11658348 - 11658129
Alignment:
Q  78 ttgattatcaattttgtgtgaatgttgctaatttcgaatttgacattagg-tgtgaattttgtgtaaattataattaattttgatatgtgattgtgcgaa 176  Q
    ||||||||||||||||||| ||| |||||||||| ||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||| |||    
T  11658348 ttgattatcaattttgtgtaaattttgctaattttgaatttgacattagggtgtgaattttgtgtaaattatagttgattttgatatgtgattgtgtgaa 11658249  T
Q  177 ttacagttttttcttcattgttagagtagannnnnnnnnnnnnnnnattgttagtttttgtaatcgttactttctctgtgttccagtctcaattcaatat 276  Q
    |||||| |||||||||||||||||| |||                 |||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  11658248 ttacagctttttcttcattgttagaatagttttttttctttttttcattgttagtttttgtaatcgttactttctctgtgtttcagtctcaattcaatac 11658149  T
Q  277 cttgcaatcatgctacttct 296  Q
    ||||||||||||||||||||    
T  11658148 cttgcaatcatgctacttct 11658129  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 102 - 299
Target Start/End: Complemental strand, 50234577 - 50234379
Alignment:
Q  102 ttgctaatttcgaatttgacattagg-tgtgaattttgtgtaaattataattaattttgatatgtgattgtgcgaattacagttttttcttcattgttag 200  Q
    |||||||||||||||||||||||||| | ||||| |||||||||||||| || ||||||||||||||||||| ||||||||  |||||||||||||||||    
T  50234577 ttgctaatttcgaatttgacattagggtatgaatattgtgtaaattatagttgattttgatatgtgattgtgtgaattacaactttttcttcattgttag 50234478  T
Q  201 agtagannnnnnnnnnnnnnnnattgttagtttttgtaatcgttactttctctgtgttccagtctcaattcaatatcttgcaatcatgctacttctctg 299  Q
    | |||                 |||||||||||||||||| |||| ||| |||||||| |||||||||||||||| ||||||| |||||||||||||||    
T  50234477 aatagtttttgttctttttttcattgttagtttttgtaatagttattttatctgtgtttcagtctcaattcaataccttgcaaccatgctacttctctg 50234379  T

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Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 47 - 162
Target Start/End: Complemental strand, 11658471 - 11658354
Alignment:
Q  47 ttgattataaattacattatagtcaaaatggtt-gattatcaattttgtgtgaatgttgctaatttcgaatttgacatta-ggtgtgaattttgtgtaaa 144  Q
    |||||||| ||||||| ||||| |||||||||| ||||||||||||||||| ||| |||||||||| ||||||||||||| |||||||||||||||||||    
T  11658471 ttgattatcaattacagtatagccaaaatggtttgattatcaattttgtgtaaattttgctaattttgaatttgacattagggtgtgaattttgtgtaaa 11658372  T
Q  145 ttataattaattttgata 162  Q
    ||||| || |||||||||    
T  11658371 ttatagttgattttgata 11658354  T

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Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 11658548 - 11658459
Alignment:
Q  1 tagggtttgaattatagctttttcattgattttgtgtaaattatcattgattataaattacattatagtcaaaatgg-ttgattatcaatt 90  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||||||||||||    
T  11658548 tagggtttgaattatag-tttttcattgattttgtgtaaattatcattgattatcaattacagtatagccaaaatggtttgattatcaatt 11658459  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 11658581 - 11658545
Alignment:
Q  91 ttgtgtgaatgttgctaatttcgaatttgacattagg 127  Q
    |||||||||| |||||||||| |||||||||||||||    
T  11658581 ttgtgtgaattttgctaattttgaatttgacattagg 11658545  T

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Target: scaffold1463 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold1463
Description:

Target: scaffold1463; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 102 - 299
Target Start/End: Original strand, 38 - 236
Alignment:
Q  102 ttgctaatttcgaatttgacattagg-tgtgaattttgtgtaaattataattaattttgatatgtgattgtgcgaattacagttttttcttcattgttag 200  Q
    |||||||||||||||||||||||||| | |||||||| ||||||||||| || ||||||||||||||||||| ||||||||| |||||||||||||||||    
T  38 ttgctaatttcgaatttgacattagggtatgaattttatgtaaattatagttgattttgatatgtgattgtgtgaattacagctttttcttcattgttag 137  T
Q  201 agtagannnnnnnnnnnnnnnnattgttagtttttgtaatcgttactttctctgtgttccagtctcaattcaatatcttgcaatcatgctacttctctg 299  Q
    | |||                 ||||||||||||||| ||||||||||||||| |||| ||||||||||| |||| ||||||||||||||| |||||||    
T  138 aatagtttttgttctttttttcattgttagtttttgtgatcgttactttctctatgtttcagtctcaattgaataccttgcaatcatgctatttctctg 236  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 51655556 - 51655650
Alignment:
Q  1 tagggtttgaattatagctttttcattgattttgtgtaaattatcattgattataaattacattatagtcaaaatgg-ttgattatcaattttgtg 95  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||||||||||||    
T  51655556 tagggtttgaattatag-tttttcattgattttgtgtaaattatcattgattatcaattacagtatagtcagaatggtttgattatcaattttgtg 51655650  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 42837218 - 42837142
Alignment:
Q  223 attgttagtttttgtaat-cgttactttctctgtgttccagtctcaattcaatatcttgcaatcatgctacttctct 298  Q
    |||||||||| ||||| | |||| ||||||||||||| |||||||||||||||| ||||||||||||| ||||||||    
T  42837218 attgttagttgttgtatttcgtttctttctctgtgtttcagtctcaattcaataccttgcaatcatgccacttctct 42837142  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 35598655 - 35598702
Alignment:
Q  154 attttgatatgtgattgtgcgaattacagttttttcttcattgttaga 201  Q
    ||||||||||||||||||| ||| || || ||||||||||||||||||    
T  35598655 attttgatatgtgattgtgtgaaatatagctttttcttcattgttaga 35598702  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 42837287 - 42837236
Alignment:
Q  154 attttgatatgtgattgtgcgaattacagttttttcttcattgttagagtag 205  Q
    ||||||||||||||||||| |||||| |  |||||||||||||||||| |||    
T  42837287 attttgatatgtgattgtgtgaattataactttttcttcattgttagaatag 42837236  T

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Target: scaffold0368 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 13519 - 13566
Alignment:
Q  154 attttgatatgtgattgtgcgaattacagttttttcttcattgttaga 201  Q
    ||||||||||||||||||| |||||| | |||||||||||||||||||    
T  13519 attttgatatgtgattgtgtgaattatacttttttcttcattgttaga 13566  T

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