View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_low_22 (Length: 302)
Name: NF10698_low_22
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 42743349 - 42743208
Alignment:
| Q |
13 |
gcaaaggttcaatagagggtattctatcactttgtcttgctctatatattcaaactttaagaaggaatatataaaaactttgtttgatctcggaatggaa |
112 |
Q |
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| T |
42743349 |
gcaaaggttcaatagagggtattctatcactttgtcttgctctatatattcaaactttaagaaggaatatataaaaactttgtttgatctcggaatggaa |
42743250 |
T |
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| Q |
113 |
tttttgaaaaataatg-ttgtagtctttaagaaggttaattt |
153 |
Q |
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| T |
42743249 |
tttttgaaaaataatgtttgtagtctttaagaaggttaattt |
42743208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 172 - 301
Target Start/End: Complemental strand, 42743181 - 42743052
Alignment:
| Q |
172 |
tatcttatcttagtagttagttcaaagaaagttctaaagatatgtaaaagtagataagtagtacgaagacataatattaaatgtatgtagtggagacaaa |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42743181 |
tatcttatcttagtagttagttcaaagaaagttctaaagatatgtaaaagtagataagtagtacgaagacataatattaaatgtatgtagttgagacaaa |
42743082 |
T |
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| Q |
272 |
acagtataattctcttttaaaagtgtgtag |
301 |
Q |
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| T |
42743081 |
acagtataattctctcttaaaagtgtgtag |
42743052 |
T |
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